Transcriptomics,Multiomics

Dataset Information

39

Transcription profiling by array of C. elegans mutant for tdp-1


ABSTRACT: Transactive response DNA-binding protein of 43 kDa (TDP-43), a heterogeneous nuclear ribonucleoprotein (hnRNP) with diverse activities, is a common denominator in several neurodegenerative disorders including amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration (FTLD). Orthologs of TDP-43 exist from mammals to invertebrates, but their functions in lower organisms remain poorly understood. Here we systematically studied mutant Caenorhabditis elegans lacking the nematode TDP-43 ortholog, TDP-1. To understand the global gene expression regulation induced by the loss of tdp-1, the C. elegans transcriptomes were compared between the N2 WT animals and the tdp-1(ok803lf) mutant. Transcriptional profiling demonstrated that the loss of TDP-1 altered expression of genes functioning in RNA processing and protein folding. These results suggest that the C. elegans TDP-1 as an RNA-processing protein may have a role in the regulation of protein homeostasis and aging. Global gene expression profiling was performed to compare the transcriptome of wild-type (N2) Caenorabditis elegans and that of tdp-1(ok803) loss-of-function mutant. We analyzed mixed stages of Caenorabditis elegans, wild-type N2 versus tdp-1(ok803), using the Affymetrix C. elegans genome array. Three biological replicates were performed.

REANALYSED by: E-GEOD-34113

ORGANISM(S): Caenorhabditis elegans  

SUBMITTER: Haiping Hao  Tao Zhang   Jiou Wang   C C Talbot    

PROVIDER: E-GEOD-34113 | ArrayExpress | 2015-04-30

SECONDARY ACCESSION(S): GSE34113PRJNA149861

REPOSITORIES: GEO, ArrayExpress

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Publications

Caenorhabditis elegans RNA-processing protein TDP-1 regulates protein homeostasis and life span.

Zhang Tao T   Hwang Ho-Yon HY   Hao Haiping H   Talbot Conover C   Wang Jiou J  

The Journal of biological chemistry 20120109 11


Transactive response DNA-binding protein (TARDBP/TDP-43), a heterogeneous nuclear ribonucleoprotein (hnRNP) with diverse activities, is a common denominator in several neurodegenerative disorders, including amyotrophic lateral sclerosis and frontotemporal lobar degeneration. Orthologs of TDP-43 exist in animals ranging from mammals to invertebrates. Here, we systematically studied mutant Caenorhabditis elegans lacking the nematode TDP-43 ortholog, TDP-1. Heterologous expression of human TDP-43 r  ...[more]

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