Genomics

Dataset Information

299

Dorsal dependent CBP binding on a genome wide scale


ABSTRACT: We find a high concordance between the binding of the Drosophila transcription factor Dorsal and the co-activator CBP during early embryogenesis. This relationship was furter examined by comparing CBP distribution in Drosophila embryos derived from wt and mutant flies lacking intranuclear Dorsal (gd7). Our data suggests a specific involvemet of CBP in initiating early dorsoventral patterning, but not in anterioposterior. CBP ChIP seq of 2-4 hours old Drosophila embryos derived from w1118 (wild-type) or gd7 homozygous mutant mothers

ORGANISM(S): Drosophila melanogaster  

SUBMITTER: Mattias Mannervik   Philige Philip  Ann Boija  Filip Crona  Per-Henrik Holmqvist  Per Stenberg 

PROVIDER: E-GEOD-34221 | ArrayExpress | 2012-06-28

SECONDARY ACCESSION(S): SRP009643GSE34221PRJNA149815

REPOSITORIES: GEO, ArrayExpress, ENA

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Publications

Preferential genome targeting of the CBP co-activator by Rel and Smad proteins in early Drosophila melanogaster embryos.

Holmqvist Per-Henrik PH   Boija Ann A   Philip Philge P   Crona Filip F   Stenberg Per P   Mannervik Mattias M  

PLoS genetics 20120621 6


CBP and the related p300 protein are widely used transcriptional co-activators in metazoans that interact with multiple transcription factors. Whether CBP/p300 occupies the genome equally with all factors or preferentially binds together with some factors is not known. We therefore compared Drosophila melanogaster CBP (nejire) ChIP-seq peaks with regions bound by 40 different transcription factors in early embryos, and we found high co-occupancy with the Rel-family protein Dorsal. Dorsal is requ  ...[more]

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