Transcriptomics

Dataset Information

12

Gene expression profiles of fibroblasts and fibroblast-reprogrammed induced pluripotent stem cells (iPSCs) from childhood cerebral adrenoleukodystrophy patients and healthy controls


ABSTRACT: Although not an affected cell type, skin fibroblasts from individuals with CC-ALD, an early onset X-linked neurological disorder, show defects in very long chain fatty acid (VLCFA) metabolism that provide the basis for clinical diagnostic tests. Skin fibroblasts from CC-ALD patients can be reprogrammed into iPS cells with all the hallmark properties of pluripotency. The iPS cell phenotypes may reflect the tissue-specificity of the lipid metabolic defects found in CC-ALD patients. We report the gene expression profiles of fibroblasts and fibroblast-reprogrammed iPSCs from childhood cerebral adrenoleukodystrophy patients and healthy controls Dermal fibroblast cultures from 2 CCALD patients and 3 healthy controls were reprogrammed into iPSCs by transfection with retroviruses desinged to express the human OCT4, SOX2, KLF4 and c-MYC cDNA. Fibroblasts and iPSCs were cultured in 1:1 ratio of DMEM/F12 medium supplemented with 20% KSR at 37°C with 5% CO2 until confluence for RNA extraction. The overall goal was to identify genes that are differentially expressed between CCALD patients and healthy controls.

REANALYSED by: E-GEOD-34309

OTHER RELATED OMICS DATASETS IN: E-GEOD-34308

ORGANISM(S): Homo sapiens  

SUBMITTER: Joseph G Hacia   Xiao-Ming Wang  Joseph Gerard Hacia 

PROVIDER: E-GEOD-34309 | ArrayExpress | 2012-03-01

SECONDARY ACCESSION(S): GSE34309PRJNA151503

REPOSITORIES: GEO, ArrayExpress

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Publications

The gene expression profiles of induced pluripotent stem cells from individuals with childhood cerebral adrenoleukodystrophy are consistent with proposed mechanisms of pathogenesis.

Wang Xiao-Ming XM   Yik Wing Yan WY   Zhang Peilin P   Lu Wange W   Dranchak Patricia K PK   Shibata Darryl D   Steinberg Steven J SJ   Hacia Joseph G JG  

Stem cell research & therapy 20121004 5


X-linked adrenoleukodystrophy (X-ALD) is a complex disorder with variable expressivity that affects the nervous, adrenocortical and male reproductive systems. Although ABCD1 mutations are known to provide the genetic basis for X-ALD, its pathogenesis is not fully elucidated. While elevated very long chain fatty acid (VLCFA) levels in blood and reduced VLCFA catabolic activity in cultured fibroblasts are biomarkers used to identify ABCD1 mutation carriers, the roles peroxisomal lipid metabolism p  ...[more]

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