Transcriptomics

Dataset Information

5

Microarray analysis of gene expression under different light conditions


ABSTRACT: The size of tomato fruits are largely dependent on growth conditions. To obtain insights on how light intensity contributes to translocation from a leaf and a fruit, we developed a plant irradiation system based on light-emitting diodes (LEDs) to a leaf. By using this system, we investigated the changes of transcript profiles of tomato leaves and fruits grown under different light conditions. 20 samples were analyzed (14 leaf samples and 6 pericarp samples); 2-3 biological replicates were used.

ORGANISM(S): Solanum lycopersicum  

SUBMITTER: Mariko Hayakumo   Eiji Goto  Kazuki Saito  Miyako Kusano  Shoko Hikosaka  Tomoko Nishizawa  Atsushi Fukushima 

PROVIDER: E-GEOD-35020 | ArrayExpress | 2012-05-01

SECONDARY ACCESSION(S): GSE35020PRJNA151157

REPOSITORIES: GEO, ArrayExpress

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Publications

Exploring tomato gene functions based on coexpression modules using graph clustering and differential coexpression approaches.

Fukushima Atsushi A   Nishizawa Tomoko T   Hayakumo Mariko M   Hikosaka Shoko S   Saito Kazuki K   Goto Eiji E   Kusano Miyako M  

Plant physiology 20120203 4


Gene-to-gene coexpression analysis provides fundamental information and is a promising approach for predicting unknown gene functions in plants. We investigated various associations in the gene expression of tomato (Solanum lycopersicum) to predict unknown gene functions in an unbiased manner. We obtained more than 300 microarrays from publicly available databases and our own hybridizations, and here, we present tomato coexpression networks and coexpression modules. The topological characteristi  ...[more]

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