Transcriptomics,Genomics

Dataset Information

4

The Transcription Factor T-bet Is Induced by Multiple Pathways and Prevents an Endogenous Th2 Cell Program during Th1 Cell Responses


ABSTRACT: T-bet is a critical transcription factor for T helper 1 (Th1) cell differentiation. To study the regulation and functions of T-bet, we developed a T-bet-ZsGreen reporter mouse strain, in which GFP faithfully reflects the expression of T-bet. By using this tool, we report that signals elicited by IL-12 and IFNg are redundant in inducing T-bet in mice infected with Toxoplasma gondii and that T-bet does not contribute to its own expression when induced by IL-12 and IFNg. While both T-bet and Stat4 are critical for IFNg production, IFNg signaling is dispensable. Strikingly, loss of T-bet results in activation of an endogenous Th2 program in cells expressing T-bet-ZsGreen. Genome-wide analyses suggest T-bet directly induces Th1-related genes but indirectly suppresses Th2-related genes. Our study revealed redundancy and synergy among several Th1-inducing pathways in regulating the expression of T-bet and IFNg, and a critical role of T-bet in suppressing an endogenous Th2 program. RNA-Seq experiments were performed using total RNAs isolated from both wild type and Tbx21-/- Th1 cells in duplicates. Tbet ChIP-seq was performed using wild type Th1 cells. H3K4me1 and H3K27me3 ChIP-seq was performed using both wild type and Tbx21-/- Th1 cells.

ORGANISM(S): Mus musculus  

SUBMITTER: Gangqing Hu   William E Paul  Lionel Feigenbaum  George Punkosdy  Liying Guo  Ryoji Yagi  Jinfang Zhu  Gang Wei  Keji Zhao  Hidehiro Yamane  Andrew J Oler  Suveena Sharma  Dragana Jankovic 

PROVIDER: E-GEOD-38808 | ArrayExpress | 2012-10-04

SECONDARY ACCESSION(S): GSE38808SRP013826PRJNA168983

REPOSITORIES: GEO, ArrayExpress, ENA

Dataset's files

Source:
Action DRS
E-GEOD-38808.README.txt Txt
E-GEOD-38808.idf.txt Idf
E-GEOD-38808.sdrf.txt Txt
Items per page:
1 - 3 of 3

Similar Datasets

2015-01-01 | S-EPMC4669486 | BioStudies
2012-01-01 | S-EPMC3392532 | BioStudies
2012-01-01 | S-EPMC4612510 | BioStudies
2014-01-01 | S-EPMC4185266 | BioStudies
2012-11-16 | E-GEOD-31320 | ArrayExpress
2008-01-01 | S-EPMC2587400 | BioStudies
2006-01-01 | S-EPMC2118252 | BioStudies
2009-01-01 | S-EPMC2810421 | BioStudies
2018-01-01 | S-EPMC6219743 | BioStudies
2020-01-01 | S-EPMC7193778 | BioStudies