Genomics

Dataset Information

5

IP of 5-methylcytosine (5-hmC) enriched DNA fragments from control and PB treated mouse livers (7 day)


ABSTRACT: 5-hmC is an epigenetic modification of the DNA base cytosine with roles in gene silencing events, imprinting and X inactivation. Phenobarbital (PB) is a well studied non-genotoxic carcinogen with roles in epigenetic perturbation. We profile 5hmC in both control mouse livers as well as in the livers of 7 day PB treated mice. 5hmC is largely found to reside in the bodies of active genes and promoter levels are perturbed upon PB induced gene activation events. 5-hmC is assocated with promoters fo silent genes. Upon PB exposire a handfull of genes are induced which reveal decreases in promoter 5hmC levels comparison of 5-hmC profiles in 5 control and 5 PB exposed mouse livers (dose: 7day PB)

ORGANISM(S): Mus musculus  

SUBMITTER: John Paterson Thomson   Harri Lempiäinen  John P Thomson 

PROVIDER: E-GEOD-41392 | ArrayExpress | 2012-11-10

SECONDARY ACCESSION(S): GSE41392PRJNA179297

REPOSITORIES: GEO, ArrayExpress

Dataset's files

Source:
Action DRS
E-GEOD-41392.additional.1.zip Other
E-GEOD-41392.idf.txt Idf
E-GEOD-41392.processed.1.zip Processed
E-GEOD-41392.processed.2.zip Processed
E-GEOD-41392.raw.1.zip Raw
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