Transcriptomics

Dataset Information

301

Identification and characterization of microRNAs in pepper from 10 tissue samples by high-throughput sequencing


ABSTRACT: High-throughput sequencing was employed to identify microRNAs in pepper from 10 tissue samples 10 sample examined

ORGANISM(S): Capsicum annuum  

SUBMITTER: JaeYun Lim   DongGyu Hwang  JuneHyun Park  Chanseok Shin 

PROVIDER: E-GEOD-41654 | ArrayExpress | 2013-08-08

SECONDARY ACCESSION(S): GSE41654SRP016511PRJNA177852

REPOSITORIES: GEO, ArrayExpress, ENA

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Publications

The hot pepper (Capsicum annuum) microRNA transcriptome reveals novel and conserved targets: a foundation for understanding MicroRNA functional roles in hot pepper.

Hwang Dong-Gyu DG   Park June Hyun JH   Lim Jae Yun JY   Kim Donghyun D   Choi Yourim Y   Kim Soyoung S   Reeves Gregory G   Yeom Seon-In SI   Lee Jeong-Soo JS   Park Minkyu M   Kim Seungill S   Choi Ik-Young IY   Choi Doil D   Shin Chanseok C  

PloS one 20130530 5


MicroRNAs (miRNAs) are a class of non-coding RNAs approximately 21 nt in length which play important roles in regulating gene expression in plants. Although many miRNA studies have focused on a few model plants, miRNAs and their target genes remain largely unknown in hot pepper (Capsicum annuum), one of the most important crops cultivated worldwide. Here, we employed high-throughput sequencing technology to identify miRNAs in pepper extensively from 10 different libraries, including leaf, stem,  ...[more]

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