Transcriptomics

Dataset Information

62

Gene expression in three stages of ripening tomato fruit


ABSTRACT: Gene expression in three stages of ripening tomato fruit (variety Ailsa Craig) was determined with the EUTOM3 Affymetrix array in order to compare with degradrome sequencing data from study GSE42661, treated as RNAseq. three replicates of each stage (MG, mature green; T, turning/breaker; RR, red ripe) were hybridized; Expression values were normalized for each sample and reported by iTAG2.3 cDNA identifier in the accompanying matrix table.

ORGANISM(S): Solanum lycopersicum  

SUBMITTER: Arnaud G Bovy   Ruud A de Maagd 

PROVIDER: E-GEOD-42783 | ArrayExpress | 2013-04-05

SECONDARY ACCESSION(S): GSE42783PRJNA183126

REPOSITORIES: GEO, ArrayExpress

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Publications

Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis.

Karlova Rumyana R   van Haarst Jan C JC   Maliepaard Chris C   van de Geest Henri H   Bovy Arnaud G AG   Lammers Michiel M   Angenent Gerco C GC   de Maagd Ruud A RA  

Journal of experimental botany 20130313 7


MicroRNAs (miRNAs) play important roles in plant development through regulation of gene expression by mRNA degradation or translational inhibition. Despite the fact that tomato (Solanum lycopersicum) is the model system for studying fleshy fruit development and ripening, only a few experimentally proven miRNA targets are known, and the role of miRNA action in these processes remains largely unknown. Here, by using parallel analysis of RNA ends (PARE) for global identification of miRNA targets an  ...[more]

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