Transcriptomics

Dataset Information

179

Transcription profiling by array of Neurogenin-3-overexpressing mouse pancreatic ductal cells with shRNA knockdown of Atoh8 against non-knockdown controls to study the role of Atoh8 during the endocrine differentiation program initiated by Neurog3 in the pancreas


ABSTRACT: Atoh8 is a transcription factor of the basic-helix-loop-helix (bHLH) family that is expressed in multiple tissues during embryonic development but whose specific functions remain unknown. The gene encoding Atoh8 is induced by various lineage- determining bHLH transcription factors in cell culture, suggesting a possible common role of this gene in multiple bHLH-driven differentiation programs. In the pancreas, the pro-endocrine bHLH factors Neurogenin3 (Neurog3) and NeuroD1 activate Atoh8 expression. Moreover, Atoh8 is expressed in the embryonic pancreas confirming its participation in the pancreatic transcriptional cascade. This work aims at gaining insight into the molecular function of Atoh8 during the endocrine differentiation program initiated by Neurog3 in the pancreas. To this aim, we have generated a recombinant adenovirus encoding an Atoh8-specific shRNA (Ad-shAtoh8) and used it to down-regulate expression of the Atoh8 gene in Neurog3-expressing pancreatic ductal cells (mPAC), a cellular model of endocrine cell differentiation. Thus, we have compared global changes in gene expression profiles between cells treated with Ad-Neurog3+shControl and cells treated with Ad-Neurog3+shAtoh8 using Affymetrix microarrays. Our results show that Atoh8 silencing significantly affects the expression of 293 genes in Neurog3-expressing mPAC cells. Gene Ontology analysis has revealed cell cycle as the biological function most significantly represented among the modified genes. These results uncover a potential function of Math6 as a regulator of cell cycle progression and provide novel insights into the link between Neurog3 and the regulation of the cell cycle. mPAC cells (mouse pancreatic duct cells) overexpressing Neurogenin3 were divided in 2 groups according to the shRNA encoded by the recombinant adenoviruses used: 1) Scramble shRNA (control for the infection effect), 2) Atonal Homolog 8-specific shRNA. Experiment was performed three independent times (3 independent biological replicates).

REANALYSED by: E-GEOD-43536

ORGANISM(S): Mus musculus  

SUBMITTER: Jordi Altirriba   Rosa Gasa  Ramon Gomis  Miriam Ejarque 

PROVIDER: E-GEOD-43536 | ArrayExpress | 2014-10-10

SECONDARY ACCESSION(S): GSE43536PRJNA186674

REPOSITORIES: GEO, ArrayExpress

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Publications

Characterization of the transcriptional activity of the basic helix-loop-helix (bHLH) transcription factor Atoh8.

Ejarque Miriam M   Altirriba Jordi J   Gomis Ramon R   Gasa Rosa R  

Biochimica et biophysica acta 20130809 11


The atonal-related Neurogenin/NeuroD family of basic helix-loop-helix (bHLH) transcription factors comprises potent inducers of neuronal and endocrine differentiation programs in the nervous and digestive system. Atonal homolog 8 (Atoh8) displays high similarity in the bHLH domain with NeuroD proteins. Yet, available evidences indicate that Atoh8 has distinctive features including a ubiquitous expression pattern in embryonic tissues and the ability to inhibit differentiation. To gain insights in  ...[more]

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