Genomics

Dataset Information

297

Redefinition of Human Androgen Responsive Elements [FOX_ChIP_exo]


ABSTRACT: The androgen receptor (AR) mediates the action of androgens by binding to androgen-responsive elements (AREs) and subsequently regulating target genes involved in prostate carcinogenesis. The precise locations, true nature, and functional roles of AREs in human prostate cancer are still unknown. Here we redefine AREs by motif-resolution AR chromatin immunoprecipitation-exonuclease (ChIP-exo) assay in human prostate cancer cells and tumors. Surprisingly, we find that, in addition to canonical full-length AREs and half-site-like AREs, a significant portion of the four redefined ARE categories comprises non-canonical full-length AREs. The redefined AREs in enhanced AR binding regions in prostate tumors versus paired non-malignant adjacent tissues regulate a prostate cancer-relevant gene network not only centered on AR, but more interestingly, on novel AR target genes mTOR, BIRC5 and BCL2L1 involved in prostate cancer cell growth and survival. The precise redefinition of AREs has important implications for understanding how AR contributes to prostate carcinogenesis. FOXA1 ChIP-exo

ORGANISM(S): Homo sapiens  

SUBMITTER: Zhong Chen   Xun Lan  Qianben Wang 

PROVIDER: E-GEOD-43678 | ArrayExpress | 2015-01-01

SECONDARY ACCESSION(S): GSE43678SRP018128PRJNA187480

REPOSITORIES: GEO, ArrayExpress, ENA

altmetric image

Publications


Human transcription factors recognize specific DNA sequence motifs to regulate transcription. It is unknown whether a single transcription factor is able to bind to distinctly different motifs on chromatin, and if so, what determines the usage of specific motifs. By using a motif-resolution chromatin immunoprecipitation-exonuclease (ChIP-exo) approach, we find that agonist-liganded human androgen receptor (AR) and antagonist-liganded AR bind to two distinctly different motifs, leading to distinc  ...[more]

Similar Datasets

2015-01-01 | E-GEOD-43720 | ArrayExpress
| GSE43785 | GEO
| GSE51063 | GEO
2011-12-31 | E-GEOD-21245 | ArrayExpress
2015-08-27 | E-GEOD-11428 | ExpressionAtlas
2015-09-01 | E-GEOD-66036 | ArrayExpress
2016-07-01 | E-GEOD-70150 | ArrayExpress
2016-08-01 | E-GEOD-82223 | ArrayExpress
2009-08-07 | E-GEOD-11428 | ArrayExpress
2015-12-19 | E-GEOD-76141 | ArrayExpress