Transcriptomics

Dataset Information

0

Genome-wide analysis reveals CLF-regulated transcripts in Arabidopsis


ABSTRACT: CURLY LEAF (CLF), the major histone methyltransferase of Polycomb Repressive Complex 2 (PRC2), modifies trimethylation of histone H3 lysine 27 (H3K27me3) and mediates dynamical chromatin repression in Arabidopsis. Here we profiled Arabidopsis transcriptomes obtained from roots, leaves, flowers and siliques of Col-0 (As described under GEO ID: GSE38612) and clf-28 plants using RNA-seq. Our analysis uncovered 3835 transcription units were up-regulated in clf-28. Compared with ChIP-CHIP data, we found at least 42% of them were associated with H3K27me3. Transcriptom profiling in roots, leaves, flowers and siliques of clf-28 plants.

ORGANISM(S): Arabidopsis thaliana  

SUBMITTER: Nam-Hai Chua   Shulin Deng  Jian Ye  Jun Liu  Huan Wang 

PROVIDER: E-GEOD-43983 | ArrayExpress | 2015-02-01

SECONDARY ACCESSION(S): GSE43983SRP018358PRJNA188296

REPOSITORIES: GEO, ArrayExpress, ENA

Similar Datasets

2016-03-28 | E-GEOD-61545 | ArrayExpress
2016-03-28 | E-GEOD-68080 | ArrayExpress
2012-08-23 | E-GEOD-38612 | ArrayExpress
2014-08-29 | E-GEOD-50464 | ArrayExpress
2014-08-29 | E-MTAB-3839 | ArrayExpress
2016-05-17 | E-GEOD-38612 | ExpressionAtlas
2016-03-28 | E-GEOD-55866 | ArrayExpress
2018-07-31 | GSE103361 | GEO
2013-12-15 | E-GEOD-53324 | ArrayExpress
2015-03-09 | E-GEOD-53620 | ArrayExpress