Transcriptomics

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92

Genome-wide analysis reveals CLF-regulated transcripts in Arabidopsis


ABSTRACT: CURLY LEAF (CLF), the major histone methyltransferase of Polycomb Repressive Complex 2 (PRC2), modifies trimethylation of histone H3 lysine 27 (H3K27me3) and mediates dynamical chromatin repression in Arabidopsis. Here we profiled Arabidopsis transcriptomes obtained from roots, leaves, flowers and siliques of Col-0 (As described under GEO ID: GSE38612) and clf-28 plants using RNA-seq. Our analysis uncovered 3835 transcription units were up-regulated in clf-28. Compared with ChIP-CHIP data, we found at least 42% of them were associated with H3K27me3. Transcriptom profiling in roots, leaves, flowers and siliques of clf-28 plants.

ORGANISM(S): Arabidopsis thaliana  

SUBMITTER: Nam-Hai Chua  Shulin Deng   Jian Ye   Jun Liu   Huan Wang    

PROVIDER: E-GEOD-43983 | ArrayExpress| 2015-02-07

SECONDARY ACCESSION(S): GSE43983SRP018358PRJNA188296

REPOSITORIES: GEO, ArrayExpress, ENA

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