Transcriptomics

Dataset Information

4

The human Gut Chip “HuGChip”, an explorative phylogenetic microarray for determining gut microbiome diversity at Family level


ABSTRACT: A phylogenetic microarray targeting 66 families described in the human gut microbiota has been developped aud used to monitor the gut microbiota's structure and diversity. The microarray format provided by Agilent and used in this study is 8x15K. A study with a total of 4 chips was realized. Arrays 1 and 2: Hybridization with 100ng of labelled 16S rRNA gene amplicons from a mock community sample and 250ng of labelled 16S rRNA gene amplicons from 1 faecal sample. Each Agilent-030618 array probe (4441) was synthetized in three replicates. Arrays 3 and 4: Hybridization with 250ng of labelled 16S rRNA gene amplicons from 2 faecal samples. Each Agilent-40558 array probe (4441) was synthetized in three replicates.

SUBMITTER: Nicolas Parisot   Jean-François Brugère  Pierre Peyret  William Tottey  Mohiedine Missaoui  Jérémie Denonfoux  Monique Alric  Eric Peyretaillade  Faouzi Jaziri 

PROVIDER: E-GEOD-44752 | ArrayExpress | 2013-03-01

SECONDARY ACCESSION(S): GSE44752PRJNA191614

REPOSITORIES: GEO, ArrayExpress

Similar Datasets

2015-08-06 | E-GEOD-71726 | ArrayExpress
2013-05-07 | E-GEOD-46677 | ArrayExpress
2013-05-02 | E-GEOD-46557 | ArrayExpress
2019-05-08 | E-MTAB-7750 | ArrayExpress
2010-06-24 | E-GEOD-18711 | ArrayExpress
2018-07-16 | PXD009056 | Pride
2010-01-01 | GSE18711 | GEO
2008-07-18 | E-MEXP-1395 | ArrayExpress
2017-03-31 | PXD004911 | Pride
| GSE84608 | GEO