Transcriptomics

Dataset Information

3

Nfix is a novel regulator of murine hematopoietic stem and progenitor cell survival


ABSTRACT: Hematopoietic stem cells are both necessary and sufficient to sustain the complete blood system of vertebrates. Here we show that Nfix, a member of the nuclear factor I (Nfi) family of transcription factors, is highly expressed by hematopoietic stem and progenitor cells (HSPC) of murine adult bone marrow. Although shRNA mediated knockdown of Nfix expression in Lineage-Sca-1+c-Kit+ HSPC had no effect on in vitro cell growth or viability, Nfix-depleted HSPC displayed a significant loss of colony forming potential, as well as short- and long-term in vivo hematopoietic repopulating activity. Analysis of recipient mice 4-20 days post-transplant revealed that Nfix-depleted HSPC establish in the bone marrow but fail to persist due to increased apoptotic cell death. Gene expression profiling of Nfix-depleted HSPC reveals that loss of Nfix expression in HSPC is concomitant with a decrease in the expression of multiple genes known to be important for HSPC survival, such as Erg, Mecom, Mpl and Prdm16. These data reveal that Nfix is a novel regulator of HSPC survival post-transplantation and establish, for the first time, a role for Nfi genes in the regulation of this cellular compartment. 3 NFIX depleted samples are compared to 3 wt samples

ORGANISM(S): Mus musculus  

SUBMITTER: Jennifer Pardieck   John T Gray  David Finkelstein  Shannon McKinney-Freeman  Satish-Kumar Nandakumar  Per Holmfeldt 

PROVIDER: E-GEOD-45492 | ArrayExpress | 2013-09-05

SECONDARY ACCESSION(S): GSE45492PRJNA194388

REPOSITORIES: GEO, ArrayExpress

Dataset's files

Source:
Action DRS
E-GEOD-45492.idf.txt Idf
E-GEOD-45492.processed.1.zip Processed
E-GEOD-45492.raw.1.zip Raw
E-GEOD-45492.sdrf.txt Txt
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