Transcriptomics

Dataset Information

0

Transcriptional profile of pulsed AsxR in Escherichia coli O157:H7 str. TUV93-0


ABSTRACT: Transcript abundance in Escherichia coli O157:H7 was determined in the presence or absence of pulsed expression of the small RNA, AsxR. AsxR was cloned under the control the arabinose inducible promoter Para. Escherichia coli O157:H7 str. TUV93-0 with pAsxR or empty vector was cultured in MEM-HEPES media to an OD600 of 0.8 and 0.2% arabinose added. 10min after addition of arabinose 10ml of cells were harvested and and pellets resuspended in 1ml of Trizol and total RNA isolated. RNAs were labelled using the SuperScript Plus indirect cDNA labelling System. Triplicate control RNAs were pooled and hybridised to seperate AsxR test RNAs on three microarays. Arrays were hybridised using the Maui hybridisation platform and Scann using and Axon Autoloader Scanner. GenePix software was used to analyse images and GPR files were analysed using Genespring 7.3.1.

SUBMITTER: Jai Justin Tree   Jai Tree  David Gally  David Tollervey 

PROVIDER: E-GEOD-46113 | ArrayExpress | 2014-05-22

SECONDARY ACCESSION(S): GSE46113PRJNA197290

REPOSITORIES: GEO, ArrayExpress

Similar Datasets

2014-05-22 | E-GEOD-46120 | ArrayExpress
2018-03-20 | E-MTAB-5912 | ArrayExpress
2012-04-20 | E-GEOD-28838 | ArrayExpress
2009-08-10 | E-GEOD-10319 | ArrayExpress
2008-07-19 | E-GEOD-12165 | ArrayExpress
2011-07-05 | E-GEOD-23001 | ArrayExpress
2010-05-25 | E-GEOD-10295 | ArrayExpress
2011-04-01 | E-GEOD-28312 | ArrayExpress
2012-05-31 | E-GEOD-29503 | ArrayExpress
2013-03-28 | E-GEOD-45559 | ArrayExpress