Transcriptomics

Dataset Information

6

Expression data from wildtype and mec-3 mutant PVD/OLL sensory neurons in C. elegans


ABSTRACT: Nociceptive neurons develop a complex dendritic arbor to sense noxious stimuli, which enables animals to react to environmental insults and perform self-protective behaviours. The genetic programs controlling neuronal dendritic morphogenesis are poorly understood. In C. elegans, the PVD sensory neuron generates a complex dendritic arbor that envelops the body of the animal. This nociceptive neuron enables study of dendrite formation in vivo. MEC-3 is a transcription factor expressed in the PVD neuron (Chatzigeorgiou et al., 2010; Li et al., 2011; Way and Chalfie, 1989). mec- 3 mutant PVD neurons fail to elaborate lateral branches and show defective function (Smith et al., 2010; Tsalik et al., 2003) (Husson et al., 2012). We used tiling arrays to identify genes regulated by the mec-3 transcription factor in PVD sensory neurons. We employ the mRNA-tagging method to isolate poly(A) RNA from the PVD and OLL neurons in wildtype and mec-3 mutants (3 replicates each) by expressing a 3X FLAG-tagged poly(A) binding protein PAB-1 in PVD and OLL under control of the ser-2prom3B promoter. The enriched poly(A) RNA is amplified using the NuGEN WT-Pico amplification system and applied to Affymetrix C. elegans tiling microarrays. Whole animal reference samples were obtained by isolating total RNA at the L2/L3 stages in wildtype and mec-3 mutants (2 replicates each) and processed as above.

ORGANISM(S): Caenorhabditis elegans  

SUBMITTER: William C Spencer   Elana Feingold-Link  Timothy O'Brien  William R Schafer  David M Miller  Steven J Husson  William Clay Spencer  Sayaka Hori  Shohei Mitani  Alexander Gottschalk  Cody J Smith  Marios Chatzigeorgiou 

PROVIDER: E-GEOD-46530 | ArrayExpress | 2013-05-02

SECONDARY ACCESSION(S): GSE46530PRJNA200918

REPOSITORIES: GEO, ArrayExpress

Similar Datasets

2010-07-08 | E-GEOD-21162 | ArrayExpress
2010-06-16 | GSE21162 | GEO
| GSE69353 | GEO
2017-01-17 | PXD005031 | Pride
2013-07-21 | E-GEOD-46154 | ArrayExpress
| PRJEB7907 | ENA
| GSE83938 | GEO
| PRJNA433383 | ENA
| GSE84013 | GEO
| GSE99711 | GEO