Genomics

Dataset Information

2

H3K9me2 antibody2.D.mel 3rd Instar Larvae Nuclei.Solexa


ABSTRACT: modENCODE_submission_4958 This submission comes from a modENCODE project of Gary Karpen. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We aim to determine the locations of the major histone modifications across the Drosophila melanogaster genome. The modifications under study are involved in basic chromosomal functions such as DNA replication, gene expression, gene silencing, and inheritance. We will perform Chromatin ImmunoPrecipitation (ChIP) using the Illumina NGS sequencing platform. We will initially assay localizations using chromatin from three cell lines and two embryonic stages, and will then extend the analysis of a subset of proteins to four additional animal tissues/stages. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); Developmental Stage: 3rd Instar Larvae; Genotype: wild type; EXPERIMENTAL FACTORS: Strain Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); Antibody H3K9me2 antibody2 (target is H3K9me2); Developmental Stage 3rd Instar Larvae

ORGANISM(S): Drosophila Melanogaster

SUBMITTER: Nicole Riddle   Gary Karpen  DCC modENCODE  Vincenzo Pirrotta  Andrey Gortchakov  Art Alekseyenko  Greg Shanower  Michael Tolstorukov  Sarah Elgin  Aki Minoda  Mitzi Kuroda  Cameron Kennedy  Peter Park  Yuri Schwartz  Peter Kharchenko 

PROVIDER: E-GEOD-47260 | ArrayExpress | 2013-05-28

SECONDARY ACCESSION(S): SRP023384GSE47260

REPOSITORIES: GEO, ArrayExpress, ENA

Dataset's files

Source:
Action DRS
E-GEOD-47260.additional.1.zip Other
E-GEOD-47260.idf.txt Idf
E-GEOD-47260.processed.1.zip Processed
E-GEOD-47260.sdrf.txt Txt
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