Genomics

Dataset Information

296

LSD1_Q3430.D.mel 3rd Instar Larvae Nuclei.Solexa


ABSTRACT: modENCODE_submission_5597 This submission comes from a modENCODE project of Gary Karpen. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We aim to determine the locations of 125 chromosomal proteins across the Drosophila melanogaster genome. The proteins under study are involved in basic chromosomal functions such as DNA replication, gene expression, gene silencing, and inheritance. We will perform Chromatin ImmunoPrecipitation (ChIP) using the Illumina NGS platform. We will initially assay localizations using chromatin from three cell lines and two embryonic stages, and will then extend the analysis of a subset of proteins to four additional animal tissues/stages For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); Developmental Stage: 3rd Instar Larvae; Genotype: wild type; EXPERIMENTAL FACTORS: Strain Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); Antibody LSD1 Q3430 (target is LSD1); Developmental Stage 3rd Instar Larvae

ORGANISM(S): Drosophila melanogaster  

SUBMITTER: Nicole Riddle   Gary Karpen  DCC modENCODE  Vincenzo Pirrotta  Andrey Gortchakov  Art Alekseyenko  Michael Tolstorukov  Greg Shanower  Sarah Elgin  Aki Minoda  Mitzi Kuroda  Cameron Kennedy  Yuri Schwartz  Peter Park  Peter Kharchenko 

PROVIDER: E-GEOD-47331 | ArrayExpress | 2013-05-28

SECONDARY ACCESSION(S): SRP023456GSE47331

REPOSITORIES: GEO, ArrayExpress, ENA

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