Transcriptomics

Dataset Information

0

EDL933 cultured in bovine small intestine content (BSIC) vs M9 minimal media


ABSTRACT: Enterohemorrhagic Escherichia coli (EHEC) are transmitted from cattle to human by means of contaminated food products resulting from fecal contamination. Transcriptome analysis was performed to gain further insight into the metabolic pathways required for persistence and growth of EHEC in the bovine intestine. Understanding the physiology of EHEC in the gut of ruminants is critical to identifying the potential nutritional basis to limiting EHEC shedding. A global transcriptome analysis was performed to gain further insight into the metabolic pathways required for persistence and growth of EHEC in the bovine intestine. DNA microarrays were performed using RNA from EHEC O157:H7 EDL933 incubated in bovine small intestine content (BSIC) compared with cells incubated in M9-minimal media. Four biological replicates collected for bacterial cultures on separate days for each media and labelled following a dye-switch design : For each media two replicates labeled in Cy3 and two replicates in Cy5.

ORGANISM(S): Escherichia coli  

SUBMITTER: Anne de la Foye  Christiane Deval   Yolande Bertin   Yolande BERTIN    

PROVIDER: E-GEOD-49468 | ArrayExpress | 2013-08-01

SECONDARY ACCESSION(S): GSE49468PRJNA213982

REPOSITORIES: GEO, ArrayExpress

altmetric image

Publications

Sorry, this publication's infomation has not been loaded in the Indexer, please go directly to PUBMED or Altmetric.

Similar Datasets

2010-05-16 | E-GEOD-14069 | ArrayExpress
2015-08-18 | E-MTAB-3828 | ArrayExpress
2009-06-26 | GSE14069 | GEO
2017-01-06 | PXD003641 | Pride
2012-01-10 | E-GEOD-13847 | ArrayExpress
2013-07-22 | E-GEOD-41975 | ArrayExpress
2011-09-05 | E-GEOD-22060 | ArrayExpress
2010-04-19 | E-GEOD-13343 | ArrayExpress
2011-09-28 | E-GEOD-24402 | ArrayExpress
| PRJNA213982 | ENA