Transcriptomics

Dataset Information

4

Transcriptional profiling of Mycobacterium tuberculosis H37Rv in whole blood from HIV- and HIV+ individuals


ABSTRACT: Mycobacterium tuberculosis (M. tb), the cause of tuberculosis (TB), utilizes the blood circulation to spread systemically and establish infection, and the risk of developing active TB (pulmonary and extrapulmonary) is significantly increased in individuals infected with human immunodeficiency virus (HIV). In this work, we have used DNA microarray analysis to investigate the transcriptome of M. tb replicating in human whole blood from both HIV-negative and HIV-positive donors compared to M. tb grown in Middlebrook 7H9 broth media in order to identify M. tb adaptations to this host environment as well as M. tb mechanisms/factors contributing to increased active and disseminated TB during M. tb/HIV co-infection. We compared the global gene expression of M. tb H37Rv replicating in whole blood from 6 HIV- and 6 HIV+ individulas at 96 hr to M. tb grown to log phase in Middlebrook 7H9 media.

ORGANISM(S): Mycobacterium tuberculosis H37Rv  

SUBMITTER: Michelle B Ryndak   Suman Laal  Susan Zolla-Pazner  Zhengyu Peng  Krishna K Singh  Meng Lu 

PROVIDER: E-GEOD-49760 | ArrayExpress | 2014-03-31

SECONDARY ACCESSION(S): GSE49760PRJNA214852

REPOSITORIES: GEO, ArrayExpress

Similar Datasets

2015-03-31 | E-GEOD-58466 | ArrayExpress
| GSE93316 | GEO
2009-06-17 | E-MEXP-2202 | ArrayExpress
2018-09-25 | PXD010255 | Pride
2014-03-03 | E-GEOD-43749 | ArrayExpress
2015-08-01 | E-GEOD-55029 | ArrayExpress
2015-12-31 | E-GEOD-53640 | ArrayExpress
2013-06-24 | E-GEOD-48237 | ArrayExpress
2014-01-07 | E-GEOD-53843 | ArrayExpress
2014-12-21 | E-GEOD-57124 | ArrayExpress