Genomics

Dataset Information

3

USP-GFP_0-12-seq


ABSTRACT: modENCODE_submission_4114 This submission comes from a modENCODE project of Kevin White. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The White Lab is aiming to map the association of all the Transcription Factors (TF) on the genome of Drosophila melanogaster. One technique that we use for this purpose is chromatin immunoprecipitation coupled with deep sequencing (ChIP-seq) utilizing an Illumina next generation sequencing platform. The data generated by ChIP-seq experiments consist basically of a plot of signal intensity across the genome. The highest signals correspond to positions in the genome occupied by the tested TF. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: USP-GFP; Developmental Stage: Embryo 0-12h; Genotype: PBac{y[+]-attP-3B}VK00033; Transgene: USP genomic coding region; EXPERIMENTAL FACTORS: Developmental Stage Embryo 0-12h; Target gene usp; Strain USP-GFP; Antibody GFP ab290 (target is Green Fluorescent Protein)

ORGANISM(S): Drosophila melanogaster  

SUBMITTER: Lijia Ma   Matthew Slattery  Kevin White  DCC modENCODE 

PROVIDER: E-GEOD-50360 | ArrayExpress | 2013-08-28

SECONDARY ACCESSION(S): GSE50360

REPOSITORIES: GEO, ArrayExpress

Dataset's files

Source:
Action DRS
E-GEOD-50360.additional.1.zip Other
E-GEOD-50360.idf.txt Idf
E-GEOD-50360.sdrf.txt Txt
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