Transcriptomics,Multiomics

Dataset Information

3

Gene expression profiling of KLF5, GATA4 and GATA6 knock down in YCC3/AGS/KATOIII cell lines


ABSTRACT: Three transcription factors KLF5, GATA4 and GATA6 are recurrently amplified in multiple gastric cancer cohorts, representing one type of lineage-survival oncogenes in gastric cancer. ChIP-Seq analysis of these three factors in multiple cell lines revealed that significant number of genomic sites are co-occupied by KLF5 and GATA4 and/or GATA6. Integrative analysis of ChIP-Seq and gene expression identified several targets of the three transcription factors in both cell lines and primary tumors, including HNF4A. These results suggest that KLF5, GATA4 and GATA6 interact and co-operate to regulate HNF4A and other genes to promote tumorigenesis in gastric cancer. Gene expression profiling of KLF5, GATA4 and GATA6 knock down in YCC3/AGS/KATOIII cells

ORGANISM(S): Homo sapiens  

DISEASE(S): Gastric Cancer

SUBMITTER: Na-Yu Chia   Patrick Tan  Niantao Deng 

PROVIDER: E-GEOD-51704 | ArrayExpress | 2014-09-05

SECONDARY ACCESSION(S): GSE51704PRJNA224586

REPOSITORIES: GEO, ArrayExpress

Dataset's files

Source:
Action DRS
E-GEOD-51704.idf.txt Idf
E-GEOD-51704.processed.1.zip Processed
E-GEOD-51704.raw.1.zip Raw
E-GEOD-51704.sdrf.txt Txt
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Publications


<h4>Objective</h4>Gastric cancer (GC) is a deadly malignancy for which new therapeutic strategies are needed. Three transcription factors, KLF5, GATA4 and GATA6, have been previously reported to exhibit genomic amplification in GC. We sought to validate these findings, investigate how these factors function to promote GC, and identify potential treatment strategies for GCs harbouring these amplifications.<h4>Design</h4>KLF5, GATA4 and GATA6 copy number and gene expression was examined in multipl  ...[more]

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