Genomics

Dataset Information

299

Methylated DNA immunoprecipitation-sequencing of HEK293 cells (HEK293-CT) and HEK293 cells stably over-expressing the BAHD1 gene (HEK-BAHD1)


ABSTRACT: we report the partial methylome (CG-rich regions) of HEK293 cells and HEK293 cells over-expressing the BAHD1 gene (HEK-BAHD1) We used MEDIP-seq to identify genomic regions differentially methylated upon overexpression of the chromatin repressor BAHD1 in HEK293 cells.

ORGANISM(S): Homo sapiens  

SUBMITTER: Emanuele Libertini   Jean-Yves Coppee  Anupam Paliwal  Helene Bierne  Caroline Proux 

PROVIDER: E-GEOD-51864 | ArrayExpress | 2015-12-11

SECONDARY ACCESSION(S): SRP032352GSE51864PRJNA225618

REPOSITORIES: GEO, ArrayExpress, ENA

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Publications

Overexpression of the Heterochromatinization Factor BAHD1 in HEK293 Cells Differentially Reshapes the DNA Methylome on Autosomes and X Chromosome.

Libertini Emanuele E   Lebreton Alice A   Lakisic Goran G   Dillies Marie-Agnès MA   Beck Stephan S   Coppée Jean-Yves JY   Cossart Pascale P   Bierne Hélène H  

Frontiers in genetics 20151201


BAH domain-containing protein 1 (BAHD1) is involved in heterochromatin formation and gene repression in human cells. BAHD1 also localizes to the inactive X chromosome (Xi), but the functional significance of this targeting is unknown. So far, research on this protein has been hampered by its low endogenous abundance and its role in epigenetic regulation remains poorly explored. In this work, we used whole-genome bisulfite sequencing (BS-seq) to compare the DNA methylation profile of HEK293 cells  ...[more]

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