Genomics

Dataset Information

116

Mapping and dynamics of regulatory DNA in A. thaliana tissues and cell types across developmental transitions


ABSTRACT: We performed DNase-seq on root tissue, root epidermal cell types, seed coat epidermal cells at two developmental stages, and open and closed flowers. Root: We performed chromatin profiling (DNase-seq) on whole root (all cell types), or root epidermal cell types (hair cell, non-hair cell). Seed coat: We performed chromatin profiling on seed coat epidermal cells from siliques at two developmental stages (4 days past anthesis, 7 days past anthesis). We preformed chromatin profiling (DNase-seq) on flowers at two developmental time points (open and closed flowers). All plants were grown on plates (roots only) or in soild in LD conditions (16hr light 22°C, 8hr dark 20°C).

ORGANISM(S): Arabidopsis thaliana  

SUBMITTER: Morgan Diegel  Molly Weaver   John A Stamatoyannopoulos   Jun Neri   Peter J Sabo   Jennifer L Nemhauser   Agnieszka Dargiel   Alessandra M Sullivan   Alex P Reynolds   Shane Neph   Andrej A Arsovski   Christine Queitsch   Kerry L Bubb   Robert Thurman   Richard Sandstrom   Audra K Johnson   Eric Haugen    

PROVIDER: E-GEOD-53324 | ArrayExpress | 2014-04-15

SECONDARY ACCESSION(S): SRP034156GSE53324PRJNA231717

REPOSITORIES: GEO, ArrayExpress, ENA

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