Transcriptomics

Dataset Information

3

Genome-wide promoter methylation analysis associated with malignant melanoma progression


ABSTRACT: Epigenetic alterations play significant roles in the melanoma tumorigenesis and malignant progression. We profiled genome-wide promoter DNA methylation patterns of melanoma cells deribed from primary lesions of Radial Growrth phase (RGP) and Vertical Growth Phase (VGP), metastatic lesions, and primary normal melanocytes by interrogating 14,495 genes using Illumina bead chip technology. By comparative analysis of the promoter methylation profiles, we identified epigenetically silenced gene signatures that potentially associated with malignant melanoma progression. Bisulphite converted genomic DNA from a group of melanoma cells representing pathologic stages of melanoma progression (3 cell lines derived from RGP melanoma lesions, 4 cell lines derived from VGP lesions, and 3 melastatic melanomas) and normal human primary melanocytes isolated from lightly pigmented adult skin were hybridized to Illumina's Infinium HumanMethylation27 BeadChips

ORGANISM(S): Homo sapiens  

SUBMITTER: Hye-Eun Kim   Byungwoo Ryu  Soonyean Hwang 

PROVIDER: E-GEOD-53516 | ArrayExpress | 2013-12-20

SECONDARY ACCESSION(S): GSE53516PRJNA232260

REPOSITORIES: GEO, ArrayExpress

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