Transcriptomics

Dataset Information

62

Identification and characterization of cold responsive microRNAs in tea plant (Camellia sinensis) based on high-throughput sequencing and their targets using degradome analysis [microarray]


ABSTRACT: Solexa sequencing technology was used to perform high throughput sequencing of the small RNA library from the cold treatment of tea leaves. Subsequently, aligning these sequencing date with plant known miRNAs, we characterized 112 C. sinensis conserved miRNAs. In addition, 215 potential candidate miRNAs were found; among them, 131 candidates with star sequence were chosen as novel miRNAs. There are both congruously and differently regulated miRNAs, and line-specific miRNAs were identified by microarray-based hybridization in response to cold stress. The miRNA chip included 3228 miRNA probes corresponding to miRNA transcripts listed in Sanger miRBase release 19.0 and 283 novel miRNAs probes founding in tea plant. In the study presented here, two tea plant cultivars, ‘Yingshuang’ (YS, a cold-tolerant tea plant cultivar) and ‘Baiye 1’ (BY, a cold-sensitive tea plant cultivar), were kept at 4°C for 4,12, 24 h, respectively, and 28°C for as control. These samples were used to acquire expression profiles of a total of 3,511 unique genes, leading to the successful construction of supervised

ORGANISM(S): Camellia sinensis  

SUBMITTER: Xujun Zhu   Mingle Wang  Xinghui Li  Wanping Fang  Yue Zhang  Zhongwei Zou  Changnian Song 

PROVIDER: E-GEOD-53632 | ArrayExpress | 2015-05-14

SECONDARY ACCESSION(S): GSE53632PRJNA232526

REPOSITORIES: GEO, ArrayExpress

altmetric image

Publications

Identification and characterization of cold-responsive microRNAs in tea plant (Camellia sinensis) and their targets using high-throughput sequencing and degradome analysis.

Zhang Yue Y   Zhu Xujun X   Chen Xuan X   Song Changnian C   Zou Zhongwei Z   Wang Yuhua Y   Wang Mingle M   Fang Wanping W   Li Xinghui X  

BMC plant biology 20141021


MicroRNAs (miRNAs) are approximately 19 ~ 21 nucleotide noncoding RNAs produced by Dicer-catalyzed excision from stem-loop precursors. Many plant miRNAs have critical functions in development, nutrient homeostasis, abiotic stress responses, and pathogen responses via interaction with specific target mRNAs. Camellia sinensis is one of the most important commercial beverage crops in the world. However, miRNAs associated with cold stress tolerance in C. sinensis remains unexplored. The use of high-  ...[more]

Similar Datasets

2014-01-09 | E-GEOD-53900 | ArrayExpress
2014-04-01 | E-GEOD-56364 | ArrayExpress
2010-06-27 | E-GEOD-22583 | ArrayExpress
2012-03-08 | E-GEOD-36258 | ArrayExpress
2014-10-01 | E-GEOD-52224 | ArrayExpress
2014-06-06 | E-GEOD-48868 | ArrayExpress
2016-06-01 | E-GEOD-72416 | ArrayExpress
2013-11-01 | E-GEOD-44145 | ArrayExpress
2014-05-09 | E-GEOD-46795 | ArrayExpress
2013-08-31 | E-GEOD-50388 | ArrayExpress