Transcriptomics

Dataset Information

62

Microarray analysis of beta-catenin regulated target genes in SW480 colon cancer cells


ABSTRACT: Deregulation of the canonical Wnt/beta-catenin pathway is one of the earliest events in the pathogenesis of colon cancer. Mutations in APC or CTNNB1 are frequent in colon cancer and cause aberrant stabilization of beta-catenin, which activates Wnt target genes by binding to chromatin via TCF/LEF transcription factors. In a comprehensive study, we conducted an integrative analysis of genome-wide chromatin occupancy of beta-catenin by chromatin immunoprecipitation coupled with high-throughput sequencing (ChIP-seq) along with gene expression profiling changes resulting from RNAi-mediated knockdown of beta-catenin in colon cancer cells. This experiment series represents the gene expression changes detected by microarray as a result of CTNNB1 perturbation. SW480 cells were transfected with control and beta-catenin siRNAs. Twenty-four hours after transfection, RNA was extracted from the cells using the RNeasy kit (Qiagen, Valencia, CA) and genome-wide cDNA microarray expression analysis was performed. The data reported here are the microarray data as processed by the standard Rosetta Resolver(R) ratio method for Agilent microarrays.

ORGANISM(S): Homo sapiens  

SUBMITTER: Julja Burchard   Brian S Roberts  Xing Dai  Michele Cleary  William T Arthur  Michele A Cleary 

PROVIDER: E-GEOD-53656 | ArrayExpress | 2013-12-27

SECONDARY ACCESSION(S): GSE53656PRJNA232592

REPOSITORIES: GEO, ArrayExpress

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