Genomics

Dataset Information

0

The Demethylase JMJD2C/KDM4C Localizes to H3K4me3 Positive Transcription Start Sites (ChIP-seq MEFs)


ABSTRACT: We have mapped binding sites for the histone demethylase, Jmjd2c/Kdm4c/Gasc1, in mouse embryonic fibroblasts (MEFs) and the impact of Jmjd2c depletion on H3K9me3 and H3K36me3 distributions. ChIP-seq was performed using antibodies recognizing Jmjd2c, H3K9me3 or H3K36me3. Chromatin was obtained from conditional Jmjd2c knockout MEFs cultured in the absence or presence of OHT to induce activation of Cre recombinase and loss of Jmjd2c expression.

ORGANISM(S): Mus musculus  

SUBMITTER: Marianne T Pedersen   Marianne Terndrup Pedersen 

PROVIDER: E-GEOD-53939 | ArrayExpress | 2014-01-09

SECONDARY ACCESSION(S): GSE53939SRP035262PRJNA233999

REPOSITORIES: GEO, ArrayExpress, ENA

altmetric image

Publications

The demethylase JMJD2C localizes to H3K4me3-positive transcription start sites and is dispensable for embryonic development.

Pedersen Marianne Terndrup MT   Agger Karl K   Laugesen Anne A   Johansen Jens V JV   Cloos Paul A C PA   Christensen Jesper J   Helin Kristian K  

Molecular and cellular biology 20140106 6


The histone demethylase JMJD2C, also known as KDM4C/GASC1, has activity against methylated H3K9 and H3K36 and is amplified and/or overexpressed in human cancers. By the generation of Jmjd2c knockout mice, we demonstrate that loss of Jmjd2c is compatible with cellular proliferation, embryonic stem cell (ESC) self-renewal, and embryonic development. Moreover, we report that JMJD2C localizes to H3K4me3-positive transcription start sites in both primary cells and in the human carcinoma KYSE150 cell  ...[more]

Similar Datasets

2014-01-09 | E-GEOD-53938 | ArrayExpress
2014-01-09 | E-GEOD-53936 | ArrayExpress
| GSE64252 | GEO
| GSE64251 | GEO
2011-01-04 | GSE20988 | GEO
2011-01-04 | E-GEOD-20988 | ArrayExpress
2011-03-31 | E-GEOD-26020 | ArrayExpress
| PRJNA320657 | ENA
2011-03-31 | E-GEOD-26038 | ArrayExpress
2014-05-23 | E-MTAB-2481 | ArrayExpress