Transcriptomics

Dataset Information

3

Integrated genomic analysis illustrates the central role of JAK-STAT pathway activation in myeloproliferative neoplasm pathogenesis [HEL cell lines]


ABSTRACT: We used expression profiling, SNP arrays, and mutational profiling to investigate a well-characterized cohort of MPN patients. MPN patients with homozygous JAK2V617F mutations were characterized by a distinctive transcriptional profile. Notably, a transcriptional signature consistent with activated JAK2 signaling is seen in all MPN patients regardless of clinical phenotype or mutational status. In addition, the activated JAK2 signature was present in patients with somatic CALR mutations. Conversely, we identified a gene expression signature of CALR mutations; this signature was significantly enriched in JAK2-mutant MPN patients consistent with a shared mechanism of transformation by JAK2 and CALR mutations. We also identified a transcriptional signature of TET2 mutations in MPN patent samples. Our data indicate that MPN patients, regardless of diagnosis or JAK mutational status are characterized by a distinct gene expression signature with upregulation of JAK-STAT target genes, demonstrating the central importance of the JAK-STAT pathway in MPN pathogenesis. [HEL cell lines] We have performed gene expression profiling in the JAK2V617F homozygous mutant HEL cell line following treatment with 2 independent shRNAs targeting JAK2 or 2 different control shRNAs

ORGANISM(S): Homo sapiens  

SUBMITTER: Omar Abdel-Wahab   Craig H Mermel  Benjamin L Ebert  Todd Hricik  Jihae Ahn  Todd R Golub  Adam J Bass  D G Gilliland  Fatima Al-Shahrour  Jean-Philippe Brunel  Raajit Rampal  Jennifer Pretz  Outi Kilpivaara  Jay Patel  Lambert Busque  Ross Levine  Martha Wadleigh 

PROVIDER: E-GEOD-54645 | ArrayExpress | 2014-06-03

SECONDARY ACCESSION(S): GSE54645PRJNA237275

REPOSITORIES: GEO, ArrayExpress

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Publications


Genomic studies have identified somatic alterations in the majority of myeloproliferative neoplasms (MPN) patients, including JAK2 mutations in the majority of MPN patients and CALR mutations in JAK2-negative MPN patients. However, the role of JAK-STAT pathway activation in different MPNs, and in patients without JAK2 mutations, has not been definitively delineated. We used expression profiling, single nucleotide polymorphism arrays, and mutational profiling to investigate a well-characterized c  ...[more]

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