Genomics

Dataset Information

302

Chromatin immunoprecipitation with next generation sequencing (ChIP-seq) of H3K27ac in primary human macrophages and foam cells


ABSTRACT: We report the enhancer landscape in primary human macrophages and foam cells using ChIP-seq for the H3K27ac histone mark CD14+ monocytes were isolated from the blood of 2 healthy male volunteers. Monocytes were differentiated into macrophages by culture for 7 days with 50ng/ml macrophage colony stimulating factor and then treated for 48 hours with either oxidized low density lipoprotein (oxLDL) to induce foam cell formation or with a control buffer that lacked oxLDL. The resulting 4 samples were then subjected to ChIP-seq for H3K27ac.

ORGANISM(S): Homo sapiens  

SUBMITTER: Michael E Reschen   Christopher O'Callaghan 

PROVIDER: E-GEOD-54972 | ArrayExpress | 2015-04-08

SECONDARY ACCESSION(S): GSE54972SRP037759PRJNA238186

REPOSITORIES: GEO, ArrayExpress, ENA

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Publications

Lipid-induced epigenomic changes in human macrophages identify a coronary artery disease-associated variant that regulates PPAP2B Expression through Altered C/EBP-beta binding.

Reschen Michael E ME   Gaulton Kyle J KJ   Lin Da D   Soilleux Elizabeth J EJ   Morris Andrew J AJ   Smyth Susan S SS   O'Callaghan Christopher A CA  

PLoS genetics 20150402 4


Genome-wide association studies (GWAS) have identified over 40 loci that affect risk of coronary artery disease (CAD) and the causal mechanisms at the majority of loci are unknown. Recent studies have suggested that many causal GWAS variants influence disease through altered transcriptional regulation in disease-relevant cell types. We explored changes in transcriptional regulation during a key pathophysiological event in CAD, the environmental lipid-induced transformation of macrophages to lipi  ...[more]

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