Transcriptomics

Dataset Information

11

Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource


ABSTRACT: We produced RNA-Seq reads from messenger RNA isolated from aerial seedling tissue for 9 hybrids (F1s) generated by crossing in a pairwise manner 18 of the founding accessions (inbred strains) of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource for Arabidopsis thaliana (see Gan et al. 2011. Nature, 477:419-23 for a description of the MAGIC genetic mapping resource). The resulting RNA-Seq data provides a resource to assess allele-specific gene expression between A. thaliana accessions. With 18 of the MAGIC parental inbred accessions (Bur-0, Can-0, Col-0, Ct-1, Edi-0, Hi-0, Kn-0, Ler-0, Mt-0, No-0, Oy-0, Rsch-4, Sf-2, Tsu-0, Wil-2, Ws-0, Wu-0, and Zu-0) crosses were performed to generate 9 sets of F1 progeny from which RNA was extracted with biological replication (three replicates) and for which mRNA-seq was performed to generate strand-specific reads. Library construction and sequencing was performed such that each set of biological replicates were sequenced as a pool (with 9-plex barcoding; each 9-plex was run on two HiSeq lanes).

REANALYSED by: E-GEOD-55482

ORGANISM(S): Arabidopsis thaliana  

SUBMITTER: Richard M Clark   Robert T Greenhalgh  Andre H Kurlovs  Edward J Osborne  Li Lei  Joshua G Steffen  Christopher M Toomajian 

PROVIDER: E-GEOD-55482 | ArrayExpress | 2014-03-01

SECONDARY ACCESSION(S): SRP039091GSE55482PRJNA239720

REPOSITORIES: GEO, ArrayExpress, ENA

Dataset's files

Source:
Action DRS
E-GEOD-55482.idf.txt Idf
E-GEOD-55482.processed.1.zip Processed
E-GEOD-55482.sdrf.txt Txt
Items per page:
1 - 3 of 3

Similar Datasets

2013-12-11 | E-GEOD-53197 | ArrayExpress
2013-12-11 | E-GEOD-53198 | ArrayExpress
2015-12-02 | E-GEOD-55482 | ExpressionAtlas
2011-08-29 | E-GEOD-30795 | ArrayExpress
2016-04-07 | E-GEOD-53197 | ExpressionAtlas
2011-08-29 | E-GEOD-30720 | ArrayExpress
2019-01-01 | S-EPMC6377460 | BioStudies
2015-03-23 | E-GEOD-30720 | ExpressionAtlas
2011-01-01 | S-EPMC4856438 | BioStudies
2014-01-01 | S-EPMC4106442 | BioStudies