Transcriptomics

Dataset Information

296

Next generation sequencing of Phaeodactylum tricornutum grown with and without nitrogen


ABSTRACT: We have done next generation sequencing of optically thin, exponentialy growing Phaeodactylum tricornutum cultures grown with and without nitrogen source to improve our undestanding of the pathways regulation under conditions that promote lipid accumulation (N-starvation). 3 biologically independent exponentially growing culture of Phaeodactylum tricornutum were pelleted and washed several times with N-free media. Each culture was devided to 2 replicates with initial cell concentration of 2X105 cells/mL, one with NaNO3 as nitrogen source and the other without any nitrogen source. The cuture were bubbled foro 48 hours and sampled for transcriptome together with other physiological parameters and lipid analysis.

ORGANISM(S): Phaeodactylum tricornutum  

SUBMITTER: Joomi Kim   Ehud Zelzion  Fedor I Kuzminov  Jorge Dinamarca  Orly Levitan  Min K Kim  Debashish Bhattacharya  Desmun Lun  Benjamin Van Mooy  Paul G Falkowski 

PROVIDER: E-GEOD-56346 | ArrayExpress | 2015-01-02

SECONDARY ACCESSION(S): GSE56346SRP040703PRJNA242990

REPOSITORIES: GEO, ArrayExpress, ENA

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Publications

Remodeling of intermediate metabolism in the diatom Phaeodactylum tricornutum under nitrogen stress.

Levitan Orly O   Dinamarca Jorge J   Zelzion Ehud E   Lun Desmond S DS   Guerra L Tiago LT   Kim Min Kyung MK   Kim Joomi J   Van Mooy Benjamin A S BA   Bhattacharya Debashish D   Falkowski Paul G PG  

Proceedings of the National Academy of Sciences of the United States of America 20141229 2


Diatoms are unicellular algae that accumulate significant amounts of triacylglycerols as storage lipids when their growth is limited by nutrients. Using biochemical, physiological, bioinformatics, and reverse genetic approaches, we analyzed how the flux of carbon into lipids is influenced by nitrogen stress in a model diatom, Phaeodactylum tricornutum. Our results reveal that the accumulation of lipids is a consequence of remodeling of intermediate metabolism, especially reactions in the tricarb  ...[more]

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