Transcriptomics

Dataset Information

56

Rare de novo copy number variants in patients with congenital pulmonary atresia


ABSTRACT: Ongoing studies using genomic microarrays and next-generation sequencing have demonstrated that the genetic contributions to cardiovascular diseases have been significantly ignored in the past. The aim of this study was to identify rare copy number variants in individuals with congenital pulmonary atresia (PA). Based on the hypothesis that rare structural variants encompassing key genes play an important role in heart development in PA patients, we performed high-resolution genome-wide microarrays for copy number variations (CNVs) in 82 PA patient-parent trios and 189 controls with an Illumina SNP array platform. CNVs were identified in 17/82 patients (20.7%), and eight of these CNVs (9.8%) are considered potentially pathogenic. Five de novo CNVs occurred at two known congenital heart disease (CHD) loci (16p13.1 and 22q11.2). Two de novo CNVs that may affect folate and vitamin B12 metabolism were identified for the first time. A de novo 1-Mb deletion at 17p13.2 may represent a rare genomic disorder that involves mild intellectual disability and associated facial features. high-resolution genome-wide microarrays for copy number variations (CNVs) in 82 PA patient-parent trios and 189 controls with an Illumina SNP array platform. Only 21 samples with potentially pathogenic CNVs are included in this records

ORGANISM(S): Homo sapiens  

SUBMITTER: Zhi-Ping Tan   Li Xie  Jin-Lan Chen  zhiping tan  Wei-Zhi Zhang  Yi-Feng Yang 

PROVIDER: E-GEOD-56422 | ArrayExpress | 2014-04-02

SECONDARY ACCESSION(S): GSE56422PRJNA243284

REPOSITORIES: GEO, ArrayExpress

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