Transcriptomics

Dataset Information

9

Transcription profiling of two different rice genotypes in response to salt stress and abscisic acid treatment


ABSTRACT: Abiotic stresses such as salinity are very important factors limiting rice growth and productivity around the world. Affymetrix rice genome array containing 48,564 japonica and 1,260 indica sequences was used to analyze the gene expression pattern of rice responsive to salinity stress, try to elucidate the difference of genome-wide gene expression profiling of two contrasting rice genotypes in response to salt stress and to discover the salinity related genes and gene interaction and networks. Under salinity condition, the number of differentially expressed genes (DEGs) in 177-103 was more than that in IR64, and most of up-regulated DEGs in 177-103 are response to stress. But in IR64, most of up-regulated DEGs are transcription related genes. The DEGs under salinity showed very strong tissue specificity, the number of DEGs in leaf was more than that in root. A lot of genes differentially expressed by exogenous ABA treatment under salinity condition, such as Leaf senescence protein, 1-deoxy-D-xylulose 5-phosphate synthase 2 precursor and Protein of unknown function DUF26 were induced by ABA and contributed to salinity tolerance. In this study, the gene expression patterns across two organs including leaves and roots at seedling stage were characterized under control, salinity, salinity+ABA treatments by using the Affymetrix rice microarray platform based on a salinity tolerant rice line derived from IR64.

REANALYSED by: E-GEOD-58603

ORGANISM(S): Oryza sativa  

SUBMITTER: Binying Fu   Wensheng Wang 

PROVIDER: E-GEOD-58603 | ArrayExpress | 2015-11-02

SECONDARY ACCESSION(S): GSE58603PRJNA253003

REPOSITORIES: GEO, ArrayExpress

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Publications

Complex molecular mechanisms underlying seedling salt tolerance in rice revealed by comparative transcriptome and metabolomic profiling.

Wang Wen-Sheng WS   Zhao Xiu-Qin XQ   Li Min M   Huang Li-Yu LY   Xu Jian-Long JL   Zhang Fan F   Cui Yan-Ru YR   Fu Bin-Ying BY   Li Zhi-Kang ZK  

Journal of experimental botany 20151027 1


To understand the physiological and molecular mechanisms underlying seedling salt tolerance in rice (Oryza sativa L.), the phenotypic, metabolic, and transcriptome responses of two related rice genotypes, IR64 and PL177, with contrasting salt tolerance were characterized under salt stress and salt+abscisic acid (ABA) conditions. PL177 showed significantly less salt damage, lower Na(+)/K(+) ratios in shoots, and Na(+) translocation from roots to shoots, attributed largely to better salt exclusion  ...[more]

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