Transcriptomics

Dataset Information

302

Comparative Genome-Wide Profiling of Transposon and Retrovirus Integration Sites in Primary Human CD4+ T Cells


ABSTRACT: We mapped Sleeping Beauty (SB) and piggyBac (PB) insertions in primary human CD4+ T cells and compared their insertion profiles with those of the MLV retrovirus and the HIV lentivirus with respect to proximity to genes, TSSs, CpG islands, DNase I hypersensitive sites, repetitive elements, chromatin marks and transcriptional status of genes. Examination of two transposon systems in one cell type.

ORGANISM(S): Homo sapiens  

SUBMITTER: Zsuzsanna Izsvák   Ismahen Ammar  Csaba Miskey  Wei Chen  Mario Bunse  Wolfgang Uckert  Zoltán Ivics  Andreas Gogol-Döring 

PROVIDER: E-GEOD-58744 | ArrayExpress | 2015-07-01

SECONDARY ACCESSION(S): GSE58744SRP043511PRJNA253316

REPOSITORIES: GEO, ArrayExpress, ENA

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