Genomics

Dataset Information

297

Genome wide mapping of NFAT1 binding sites in dendritic cells and of chromatin state in steady and dectin-1 activated dendritic cell line D1


ABSTRACT: We generated genome-wide chromatin-state maps of mouse dendritic cells in steady and dectin-1 activated with or without NFAT inhibitor FK506. We found the differential H3K4me3 signatures in these cells. This study provides the epigenetic signatures of steady, dectin-1activated with or without NFAT inhibition. We also generated stable dendritic cell line D1 expressing a V5 tagging NFAT1. This cell line was used to map the global binding sites of NFAT1 upon dectin-1 activation with 10ug/ml curdlan for 30 minutes. examine NFAT1-v5 genome wide binding sites and differential H3K4me3 epigenetic modification in steady, dectinn-1 activated with or without NFAT inhibiton.

ORGANISM(S): Mus musculus  

SUBMITTER: Marina Yurieva   Hong-Bing Yu 

PROVIDER: E-GEOD-59998 | ArrayExpress | 2015-01-05

SECONDARY ACCESSION(S): GSE59998SRP045171PRJNA257249

REPOSITORIES: GEO, ArrayExpress, ENA

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Publications

NFATc2 mediates epigenetic modification of dendritic cell cytokine and chemokine responses to dectin-1 stimulation.

Yu Hong-Bing HB   Yurieva Marina M   Balachander Akhila A   Foo Ivy I   Leong Xiangrong X   Zelante Teresa T   Zolezzi Francesca F   Poidinger Michael M   Ricciardi-Castagnoli Paola P  

Nucleic acids research 20141230 2


The transcription factor NFATc2 regulates dendritic cell (DC) responses to microbial stimulation through the C-type lectin receptor dectin-1. But the genetic targets of NFATc2 and their effects on DC function remain largely unknown. Therefore we used ChIP-seq to conduct genome-wide mapping of NFATc2 target sites in dectin-1-activated DCs. By combining binding-site data with a comprehensive gene expression profile, we found that NFATc2 occupancy regulates the expression of a subset of dectin-1-ac  ...[more]

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