Transcriptomics

Dataset Information

3

Transcriptome profile of wild type Azoarcus sp. BH72 grown under microaerobic condition (0.3% oxygen) compared with that grown under aerobic condition (21% oxygen), both in presence of combined nitrogen source, respectively


ABSTRACT: Low oxygen tensions are often encountered in flooded soils of rice fields by root-associated, strictly respiratory, beta proteobacterium, Azoarcus sp. BH72 which fixes nitrogen only under microaerobic condition. In this study, genome wide oligonucleotide microarrays were used compare the global transcription profile of Azoarcus sp. BH72 under microaerobic condition with cells grown under aerobic condition, both with ammonia as sole nitrogen source. The outcome of this study will provide a better insight about the establishment of this endophyte in the microaerobic environment, probably prevailing inside of the rice root niche . RNA from cells grown under microaerobic condition with 0.3% oxygen (experiment) and aerobic condition with 21% oxygen (control), respectively was used for two color whole genome microarray approach.

ORGANISM(S):

SUBMITTER: Barbara Reinhold-Hurek   Abhijit Sarkar 

PROVIDER: E-GEOD-61387 | ArrayExpress | 2014-09-13

SECONDARY ACCESSION(S): GSE61387PRJNA260930

REPOSITORIES: GEO, ArrayExpress

Similar Datasets

2013-08-15 | E-GEOD-49912 | ArrayExpress
2011-12-01 | E-GEOD-25939 | ArrayExpress
2013-08-01 | E-GEOD-49394 | ArrayExpress
2012-11-30 | E-GEOD-35187 | ArrayExpress
1000-01-01 | S-EPMC205294 | BioStudies
2011-12-01 | GSE25939 | GEO
2013-08-15 | E-GEOD-49913 | ArrayExpress
1000-01-01 | S-EPMC2681912 | BioStudies
2012-01-01 | S-EPMC3262810 | BioStudies
2014-01-01 | S-EPMC3916325 | BioStudies