Transcriptomics

Dataset Information

36

Transcription profiling of rice varieties Nipponbare and 6-4 grown in either phosphorus deficient or fertilized soil


ABSTRACT: Nipponbare performs poorly in phosphorus (P) deficient soil whereas a Nipponbare-derived NIL containing the Pup1 allele of donor parent Kasalath is tolerant to P deficiency. In this experiment we compared gene expression patterns in roots of this NIL to Nipponbare, grown either in a P deficient or P fertilized soil. The aim is to separate constitutive differences in expression from those induced by P deficiency. Experiment Overall Design: Total RNA was extrancted from root that were grown under two conditions and prepared three biological replicant in each line (total 6 samples in each line). Experiment Overall Design: We used 6 slides for this experiment, in each slide, Nipponbare and 6-4 samples grown under same condition were hybridized.

ORGANISM(S): Oryza sativa  

SUBMITTER: Matthias Wissuwa   

PROVIDER: E-GEOD-6187 | ArrayExpress| 2014-05-02

SECONDARY ACCESSION(S): GSE6187PRJNA100661

REPOSITORIES: GEO, ArrayExpress

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