Transcriptomics,Multiomics

Dataset Information

5

Expression data from a 24h time series of dexamethasone treatment for mouse bone marrow derived macrophages


ABSTRACT: Macrophages are amongst the major targets of glucocorticoids (GC) as therapeutic anti-inflammatory agents. Here we show that GC treatment of mouse and human macrophages initiates a cascade of induced gene expression including many anti-inflammatory genes. Inducible binding of the glucocorticoid receptor (GR) was detected at candidate enhancers in the vicinity of induced genes in both species and this was strongly associated with canonical GR binding motifs. However, the sets of inducible genes, the candidate enhancers, and the GR motifs within them, were highly-divergent between the two species. 3 biological replicates of a 6 point time series for the transcriptional response to dexamethasone 100nM

ORGANISM(S): Mus musculus  

SUBMITTER: Robert S Young   David A Hume  Wendy A Bickmore  Alasdair W Jubb 

PROVIDER: E-GEOD-61879 | ArrayExpress | 2015-12-17

SECONDARY ACCESSION(S): GSE61879PRJNA262585

REPOSITORIES: GEO, ArrayExpress

Dataset's files

Source:
Action DRS
E-GEOD-61879.idf.txt Idf
E-GEOD-61879.processed.1.zip Processed
E-GEOD-61879.raw.1.zip Raw
E-GEOD-61879.sdrf.txt Txt
Items per page:
1 - 4 of 4
altmetric image

Publications

Enhancer Turnover Is Associated with a Divergent Transcriptional Response to Glucocorticoid in Mouse and Human Macrophages.

Jubb Alasdair W AW   Young Robert S RS   Hume David A DA   Bickmore Wendy A WA  

Journal of immunology (Baltimore, Md. : 1950) 20151209 2


Phenotypic differences between individuals and species are controlled in part through differences in expression of a relatively conserved set of genes. Genes expressed in the immune system are subject to especially powerful selection. We have investigated the evolution of both gene expression and candidate enhancers in human and mouse macrophages exposed to glucocorticoid (GC), a regulator of innate immunity and an important therapeutic agent. Our analyses revealed a very limited overlap in the  ...[more]

Similar Datasets

2015-12-17 | E-GEOD-61880 | ArrayExpress
2015-12-17 | E-GEOD-61881 | ArrayExpress
2015-12-17 | E-GEOD-61877 | ArrayExpress
2015-12-17 | E-GEOD-61878 | ArrayExpress
2015-12-17 | E-GEOD-61881 | BioStudies
| GSE61879 | GEO
2016-01-01 | S-EPMC4707550 | BioStudies
1000-01-01 | S-EPMC5745231 | BioStudies
2019-01-01 | S-EPMC6635475 | BioStudies
1000-01-01 | S-EPMC1849982 | BioStudies