Transcriptomics

Dataset Information

3

Comprehensive Serial Analysis of Gene Expression of the Cervical Epithelium Transcriptome


ABSTRACT: In this study, we sequenced 691,390 SAGE tags from four libraries. Cervical L-SAGE libraries N1, N2, C1, and C2 were sequenced to 165,624, 181,224, 173,534, and 171,008 tags, respectively. Duplicate ditags were eliminated from analysis resulting in 136,276, 139,656, 154,828 and 136,386 useful tags respectively and a total of 24 058 unique tags. 15,438 of the unique tags mapped to annotated UniGene identifiers. We characterized the transcriptome of normal cervical tissue and evaluated the highly expressed genes in terms of tissue specificity, conserved expression among the normal libraries and their altered expression in CIN III lesions. Keywords: Cervical Epithelium, Long SAGE Four Long SAGE libraries were created from cervical epithelium biopsies. Two were CIN III and two were normal cervical tissue.

ORGANISM(S): Homo sapiens  

SUBMITTER: Wan L Lam   Michele Follen  Thomas Ehlen  Ashleen Shadeo  Calum MacAulay  Dirk Van NieKirk  Dianne Miller  Raj Chari1  Jasinka Matisic  Greg Vatcher  Kim M Lonergan  Jennifer Campbell 

PROVIDER: E-GEOD-6252 | ArrayExpress | 2008-02-18

SECONDARY ACCESSION(S): GSE6252PRJNA99681

REPOSITORIES: GEO, ArrayExpress

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