Transcriptomics

Dataset Information

77

Gene expression profiles of components isolated from developing kidney at E11.5, E12.5 & E15.5 using LCM. (GUDMAP Series ID: 10)


ABSTRACT: The long term objective is to create an encyclopedia of the expression levels of all genes in multiple components of the developing kidney. The central thesis is straightforward. The combination of laser capture microdissection (LCM) plus microarray analysis offers a powerful, efficient and effective method for the creation of a global gene expression atlas of the developing kidney. Microarrays with essentially complete genome coverage can be used to quantitate expression levels of every gene in laser capture microdissected components of the developing kidney. The ensuing rapid read-out provides an expression atlas that is more sensitive, more economical and more complete than would be possible by in situ hybridizations alone. Keywords: Comparison of kidney components. At different developmental time points we isolate discrete elements of the kidney by using laser capture microdissection and then define their gene expression profiles with microarrays.

ORGANISM(S): Mus musculus  

SUBMITTER: Eric Brunskill   GUDMAP Developers  Steve Potter 

PROVIDER: E-GEOD-6290 | ArrayExpress | 2006-11-18

SECONDARY ACCESSION(S): GDS3865GSE6290PRJNA100599

REPOSITORIES: GEO, ArrayExpress

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Publications

Analysis of early nephron patterning reveals a role for distal RV proliferation in fusion to the ureteric tip via a cap mesenchyme-derived connecting segment.

Georgas Kylie K   Rumballe Bree B   Valerius M Todd MT   Chiu Han Sheng HS   Thiagarajan Rathi D RD   Lesieur Emmanuelle E   Aronow Bruce J BJ   Brunskill Eric W EW   Combes Alexander N AN   Tang Dave D   Taylor Darrin D   Grimmond Sean M SM   Potter S Steven SS   McMahon Andrew P AP   Little Melissa H MH  

Developmental biology 20090606 2


While nephron formation is known to be initiated by a mesenchyme-to-epithelial transition of the cap mesenchyme to form a renal vesicle (RV), the subsequent patterning of the nephron and fusion with the ureteric component of the kidney to form a patent contiguous uriniferous tubule has not been fully characterized. Using dual section in situ hybridization (SISH)/immunohistochemistry (IHC) we have revealed distinct distal/proximal patterning of Notch, BMP and Wnt pathway components within the RV  ...[more]

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