Genomics

Dataset Information

137

Genome-wide binding patterns of group B Sox proteins in four Drosophila species


ABSTRACT: We used DamID-seq to analyze the genome-wide binding patterns of the group B Sox proteins Dichaete and SoxNeuro in four species of Drosophila: D. melanogaster, D. simulans, D. yakuba and D. pseudoobscura. Both binding site turnover between species and a comparison of the binding properties of the two partially-redundant transcription factors were analyzed. We found that, despite widespread turnover, genomic intervals that are commonly bound by both Dichaete and SoxNeuro are highly conserved in Drosophila. DamID for Dichaete (Dichaete-Dam) was performed in D. melanogaster, D. simulans, D. yakuba and D. pseudoobscura, while DamID for SoxNeuro (SoxN-Dam) was performed in D. melanogaster and D. simulans. The control experiment, Dam-only, was performed in all species. Three biological replicates were sequenced for each condition in each species.

SUBMITTER: Steve Russell  Sarah H Carl   Sarah Carl    

PROVIDER: E-GEOD-63333 | ArrayExpress| 2014-11-28

SECONDARY ACCESSION(S): SRP049939GSE63333PRJNA267532

REPOSITORIES: GEO, ArrayExpress, ENA

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