Transcriptomics

Dataset Information

88

Gene expression analysis of cervical cancer progression


ABSTRACT: Affymetrix-U133-plus2.0-based gene expression analysis of laser-captured epithelium from 128 cervical tissue specimens from women enrolled in SUCCEED Cervical cancer (CC) is the second most frequent cancer in women and the third leading cause of cancer death in women worldwide. Our analysis of normal, precancerous, and cancerous cervical tissue shows that progress of the disease is a cascade of increased DNA replication/repair and cell proliferation followed by substantial metabolic shifts. The data show a sharp decrease in estrogen receptor alpha (ERα) in tumor cells, and ranking tissue specimens by estrogen-responsive gene expression correlates remarkably closely with histological pathology. Johan, den Boon, Morgridge Institute for Research at University of Wisconsin-Madison Paul, Ahlquist, Howard Hughes Medical Institute and Morgridge Institute for Research at University of Wisconsin-Madison Nicolas, Wentzensen, National Cancer Institute 24 normal, 14 CIN1 lesions, 22 CIN2 lesions, 40 CIN3 lesions, and 28 cancers specimens were cryosecrtioned and used for laser-capture, RNA extraction, two rounds of T7-mediated amplification, and cRNA biotinylation. Bio-cRNA was hybridized to Affymetrix U133-Plus2.0 arrays, scanned signals were processed through GC-RMA

ORGANISM(S): Homo sapiens  

SUBMITTER: Johan den Boon  Nicolas Wentzensen   Paul Ahlquist    

PROVIDER: E-GEOD-63514 | ArrayExpress | 2015-08-19

SECONDARY ACCESSION(S): GSE63514PRJNA268109

REPOSITORIES: GEO, ArrayExpress

altmetric image

Publications

Molecular transitions from papillomavirus infection to cervical precancer and cancer: Role of stromal estrogen receptor signaling.

den Boon Johan A JA   Pyeon Dohun D   Wang Sophia S SS   Horswill Mark M   Schiffman Mark M   Sherman Mark M   Zuna Rosemary E RE   Wang Zhishi Z   Hewitt Stephen M SM   Pearson Rachel R   Schott Meghan M   Chung Lisa L   He Qiuling Q   Lambert Paul P   Walker Joan J   Newton Michael A MA   Wentzensen Nicolas N   Ahlquist Paul P  

Proceedings of the National Academy of Sciences of the United States of America 20150608 25


To study the multistep process of cervical cancer development, we analyzed 128 frozen cervical samples spanning normalcy, increasingly severe cervical intraepithelial neoplasia (CIN1- CIN3), and cervical cancer (CxCa) from multiple perspectives, revealing a cascade of progressive changes. Compared with normal tissue, expression of many DNA replication/repair and cell proliferation genes was increased in CIN1/CIN2 lesions and further sustained in CIN3, consistent with high-risk human papillomavir  ...[more]

Similar Datasets

2008-06-04 | GSE10092 | GEO
| GSE104758 | GEO
| GSE99511 | GEO
2011-10-18 | E-GEOD-5049 | ArrayExpress
2013-09-20 | E-MEXP-3466 | ArrayExpress
2018-05-03 | PXD008723 | Pride
2009-02-20 | GSE11573 | GEO
2014-06-02 | E-GEOD-41075 | ArrayExpress
2016-12-28 | E-GEOD-75132 | ArrayExpress
2014-05-01 | E-GEOD-11573 | ArrayExpress