Transcriptomics

Dataset Information

296

Gene expression changes in Suillus luteus- Pinus sylvestris ectomycorrhizal roots compared to Suillus luteus free-living mycelium


ABSTRACT: Illumina HiSeq technology was used to generate mRNA profiles from Suillus luteus ectomycorrhizal roots compared to free-living mycelium . Mycorrhizal roots were harvested after 40 days, pooled and used for RNA extraction. Reads of 2X100bp were generated and aligned to Suillus luteus (http://genome.jgi-psf.org/Suilu1/Suilu1.home.html) using CLC Genomics Workbench 6. mRNA profiles from Suillus luteus ectomycorrhizal roots and free-living mycelium were generated by paired-end (2x100bp) Illumina HiSeq2000 sequencing. Two biological replicates were sequenced for mycorrhizal and mycelium samples.

ORGANISM(S): Suillus luteus  

SUBMITTER: Annegret Kohler   Jan Colpaert  Francois Rineau  Francis Martin 

PROVIDER: E-GEOD-63926 | ArrayExpress | 2015-02-06

SECONDARY ACCESSION(S): SRP050869GSE63926PRJNA269499

REPOSITORIES: GEO, ArrayExpress, ENA

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