Transcriptomics

Dataset Information

297

Comparison of poly(A) and capture RNA-seq: controlled degradation in vitro


ABSTRACT: We compare the performance of two library preparation protocols (poly(A) and exome capture) in in vitro degraded RNA samples VcaP cell were grown, and treated with MDV3100 (enzalutamide) or DHT (dihydrotestosterone), intact RNA was isolated and samples were prepared in technical triplicates using two library preparation protocol. Also cells were subject to in vitro degradation through incubation of the whole cell lysate in 37C for increasing amounts of time. Following incbation paired capture and poly(A) libraries were prepared.

ORGANISM(S): Homo sapiens  

SUBMITTER: Marcin Piotr Cieslik   Arul M Chinnaiyan  Marcin P Cieslik 

PROVIDER: E-GEOD-64113 | ArrayExpress | 2015-08-03

SECONDARY ACCESSION(S): GSE64113SRP051102PRJNA270181

REPOSITORIES: GEO, ArrayExpress, ENA

Similar Datasets

2016-03-31 | PXD003664 | Pride
2010-10-20 | E-GEOD-22410 | ArrayExpress
2016-12-03 | E-MTAB-4958 | ArrayExpress
2019-02-15 | E-MTAB-7362 | ArrayExpress
2011-09-24 | E-GEOD-32318 | ArrayExpress
2015-05-12 | E-GEOD-61730 | ArrayExpress
2016-05-13 | E-GEOD-56690 | ExpressionAtlas
2016-04-28 | E-GEOD-56691 | ExpressionAtlas
2013-04-04 | E-GEOD-42268 | ArrayExpress
2015-01-15 | E-GEOD-57231 | ArrayExpress