Transcriptomics

Dataset Information

0

Saccharomyces cerevisiae: DSB mapping by Break-chip in a two-color experiment (G1 control vs. S phase samples)


ABSTRACT: Break-chip (microarray-based double strand break mapping) analysis of mec1 cells recovering from 200 mM hydroxyurea in the presence or absence of 0.8 micromolar bathophenanthroline sulfonate (BPS). We asked if the presence of an iron chelator, BPS, during cell recovery from transient exposure to 200 mM hydroxyurea changes the global patterns of DNA double strand breaks (DSBs). We used a yeast checkpoint mutant, mec1, which has been shown to produce DSBs at replication forks after hydroxyurea was removed from the cell culture. We synchronously released cells from the G1/S transition into S phase in the presence of 200 mM hydroxyurea. After 1h treatment, the drug was removed and cells were allowed to recover in fresh medium for 1h in the presence or absence of 0.8 micromolar BPS. Recover (R) samples, R-1h-BPS and R-1h+BPS, as well as the G1 control samples were collected. Break-chip analysis was performed as previously described (Feng et al., G3(Bethesda) 2011 Oct;1(5):327-35. doi: 10.1534/g3.111.000554).

ORGANISM(S): Saccharomyces cerevisiae  

SUBMITTER: Wenyi Feng  Elizabeth Hoffman    

PROVIDER: E-GEOD-64446 | ArrayExpress | 2015-01-12

SECONDARY ACCESSION(S): GSE64446PRJNA271025

REPOSITORIES: GEO, ArrayExpress

altmetric image

Publications

Replication stress-induced chromosome breakage is correlated with replication fork progression and is preceded by single-stranded DNA formation.

Feng Wenyi W   Di Rienzi Sara C SC   Raghuraman M K MK   Brewer Bonita J BJ  

G3 (Bethesda, Md.) 20111001 5


Chromosome breakage as a result of replication stress has been hypothesized to be the direct consequence of defective replication fork progression, or "collapsed" replication forks. However, direct and genome-wide evidence that collapsed replication forks give rise to chromosome breakage is still lacking. Previously we showed that a yeast replication checkpoint mutant mec1-1, after transient exposure to replication impediment imposed by hydroxyurea (HU), failed to complete DNA replication, accum  ...[more]

Similar Datasets

| GSE64446 | GEO
2015-01-12 | E-GEOD-63517 | ArrayExpress
2015-01-12 | E-GEOD-63516 | ArrayExpress
2015-01-12 | E-GEOD-58808 | ArrayExpress
2014-05-01 | E-GEOD-45450 | ArrayExpress
2015-11-02 | E-GEOD-67787 | ArrayExpress
2010-11-17 | E-GEOD-25394 | ArrayExpress
2016-08-01 | E-GEOD-68022 | ArrayExpress
2015-11-11 | E-GEOD-68739 | ArrayExpress
2014-05-01 | E-GEOD-45449 | ArrayExpress