Transcriptomics

Dataset Information

3

Assessment of MEK-ERK pathway targeting by BRAF, NRAS and KRAS gene mutations in plasma cell dyscrasias [U266 human myeloma cell line]


ABSTRACT: Multiple myeloma (MM) is a malignant disorder characterized by the clonal proliferation of plasma cells (PCs) in the bone marrow (BM). The genetic background and clinical course of the disease are largely heterogeneous, and MM pathophysiology ranges from the premalignant condition of monoclonal gammopathy of undetermined significance (MGUS) to smoldering MM, symptomatic MM, and extramedullary MM/plasma cell leukemia (PCL). Recent genome-wide sequencing efforts have provided the rationale for molecularly aimed treatment approaches, identifying mutations that can be specifically targeted, such as those in the mitogen-activated protein kinase (MAPK) pathway, which represent the most prevalent mutations in MM. Among these, mutations affecting BRAF gene, detected in 4-15% of patients, are of potential immediate clinical relevance due to the availability of effective inhibitors of this serine-threonine kinase which are in fact being explored also in myeloma. In this study, we screened by next generation sequencing (NGS) a large and representative series of intramedullary and extramedullary MM patients, including primary and secondary plasma cell leukemia (pPCL and sPCL, respectively), for mutations in BRAF, NRAS and KRAS genes. We evaluated the relationship of identified variants with other clinical and biological features and determined the transcriptional signature associated with MAPK pathway activation in MM. To further elucidate the transcriptional programs modulated by BRAF activation in MM, we used the PLX4032 drug to inhibit BRAF activity in U266 human myeloma cell line (HMCL), carrying K601N mutation and showing constitutive activation of MEK/ERK signaling. After confirming its ability to suppress MAPK pathway and myeloma cell proliferation in culture in the U266 cell line, we investigated the specific modulation of gene expression induced by the drug. U266 cells were treated with PLX4032 (30 µM) or DMSO for 12 hours and subjected to gene expression profiling (GEP) analysis by using Affymetrix GeneChip Human Gene 1.0ST arrays.

ORGANISM(S): Homo sapiens  

SUBMITTER: Luca Agnelli   Simona Marzorati  Giulia Milesi  Katia Todoerti  Giovanni Tonon  Luca Baldini  Maria A Greco  Martina Manzoni  Mara Mazzoni  Marzia Barbieri  Serena Galletti  Agostino Cortelezzi  Antonio Palumbo  Pellegrino Musto  Marta Lionetti  Antonino Neri  Sonia Fabris 

PROVIDER: E-GEOD-66292 | ArrayExpress | 2015-07-01

SECONDARY ACCESSION(S): GSE66292PRJNA276448

REPOSITORIES: GEO, ArrayExpress

altmetric image

Publications


Multiple myeloma (MM) is a clinically and genetically heterogeneous plasma cell (PC) malignancy. Whole-exome sequencing has identified therapeutically targetable mutations such as those in the mitogen-activated protein kinase (MAPK) pathway, which are the most prevalent MM mutations. We used deep sequencing to screen 167 representative patients with PC dyscrasias [132 with MM, 24 with primary PC leukemia (pPCL) and 11 with secondary PC leukemia (sPCL)] for mutations in BRAF, NRAS and KRAS, which  ...[more]

Similar Datasets

2015-07-01 | E-GEOD-66291 | ArrayExpress
| GSE71109 | GEO
2012-03-01 | E-MEXP-2961 | ArrayExpress
2015-10-06 | E-MTAB-3600 | ArrayExpress
2015-10-10 | E-MTAB-3577 | ArrayExpress
| GSE77653 | GEO
| GSE110113 | GEO
2014-10-15 | E-GEOD-48910 | ArrayExpress
2013-07-02 | E-GEOD-41929 | ArrayExpress
2019-03-06 | PXD011551 | Pride