Transcriptomics,Multiomics

Dataset Information

5

Host transcriptional reprogramming across diverse strains of the rice bacterial leaf streak pathogen Xanthomonas oryzae pv.oryzicola


ABSTRACT: We performed RNA-Seq of leaves of Oryza sativa L. ssp. japonica cv. Nipponbare 48 hours after inoculation with 10 geographically diverse strains of Xanthomonas oryzae pv. oryzicola, the causal agent of bacterial leaf streak. Results provide insight into the molecular basis of bacterial leaf streak, particularly the role of transcription activator-like effectors in the disease. Examination of mRNA levels in Oryza sativa L. ssp. japonica cv. Nipponbare leaves at 48 hours after inoculation with 10 strains of Xanthomonas oryzae pv.oryzicola with three biological replicates for each compared to three replicates of mock inoculated O sativa as the control

OTHER RELATED OMICS DATASETS IN: PRJNA280380

ORGANISM(S): Oryza sativa Japonica Group  

SUBMITTER: Adam Bogdanove   Li Wang  Nicholas J Booher  Adam J Bogdanove  Katherine E Wilkins 

PROVIDER: E-GEOD-67588 | ArrayExpress | 2015-05-01

SECONDARY ACCESSION(S): GSE67588SRP056884PRJNA280380

REPOSITORIES: GEO, ArrayExpress, ENA

Dataset's files

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E-GEOD-67588.idf.txt Idf
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Publications

TAL effectors and activation of predicted host targets distinguish Asian from African strains of the rice pathogen Xanthomonas oryzae pv. oryzicola while strict conservation suggests universal importance of five TAL effectors.

Wilkins Katherine E KE   Booher Nicholas J NJ   Wang Li L   Bogdanove Adam J AJ  

Frontiers in plant science 20150721


Xanthomonas oryzae pv. oryzicola (Xoc) causes the increasingly important disease bacterial leaf streak of rice (BLS) in part by type III delivery of repeat-rich transcription activator-like (TAL) effectors to upregulate host susceptibility genes. By pathogen whole genome, single molecule, real-time sequencing and host RNA sequencing, we compared TAL effector content and rice transcriptional responses across 10 geographically diverse Xoc strains. TAL effector content is surprisingly conserved ove  ...[more]

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