Transcriptomics

Dataset Information

6

Cerebellum Illumina Inf 450 DNA methylation samples from HIV+ and HIV- human subjects


ABSTRACT: Genome wide DNA methylation profiles of cerebellum from HIV positive and HIV negative human subjects. The Illumina Infinium 450k Human DNA methylation Beadchip v1.2 was used to obtain DNA methylation profiles across approximately 486,000 CpGs. Dataset included 20 subjects from the USA. The epigenetic clock software (Horvath 2013) was used to measure epigenetic age acceleration effects and to relate them to HIV status. Bisulphite converted DNA from the 20 samples were hybridised to the Illumina Infinium 450k Human Methylation Beadchip. 8 HIV+ subjects were compared to 12 HIV- subjects.

ORGANISM(S): Homo sapiens  

SUBMITTER: Steve Horvath   Andrew J Levine 

PROVIDER: E-GEOD-67748 | ArrayExpress | 2015-06-09

SECONDARY ACCESSION(S): GSE67748PRJNA280836

REPOSITORIES: GEO, ArrayExpress

altmetric image

Publications

HIV-1 Infection Accelerates Age According to the Epigenetic Clock.

Horvath Steve S   Levine Andrew J AJ  

The Journal of infectious diseases 20150512 10


Infection with human immunodeficiency virus type 1 (HIV) is associated with clinical symptoms of accelerated aging, as evidenced by the increased incidence and diversity of age-related illnesses at relatively young ages and supporting findings of organ and cellular pathologic analyses. But it has been difficult to detect an accelerated aging effect at a molecular level.Here, we used an epigenetic biomarker of aging based on host DNA methylation levels to study accelerated aging effects due to HI  ...[more]

Similar Datasets

2015-06-09 | E-GEOD-67749 | ArrayExpress
2014-11-03 | E-GEOD-53840 | ArrayExpress
2015-06-09 | E-GEOD-53841 | ArrayExpress
2015-06-09 | E-GEOD-59457 | ArrayExpress
| GSE77696 | GEO
2014-03-05 | E-GEOD-50835 | ArrayExpress
2014-01-30 | E-GEOD-42372 | ArrayExpress
2014-09-24 | E-GEOD-57853 | ArrayExpress
2012-10-19 | E-GEOD-41169 | ArrayExpress
| GSE87582 | GEO