Transcriptomics

Dataset Information

297

Transcription profiling by high throughput sequencing of Arabidopsis transgenic plants expressing 35S::FLAG-GR-KAN1 exposed to either mock treatment or dexamethasone (DEX) to induce KAN1 release from its cytoplasmic blockage


ABSTRACT: RNA-Seq of Arabidopsis thaliana Col-0 and 35S::FLAG-GR-KAN1 plants grown in ambient light or shade. 8 samples (Col-0 wildtype, 35S::FLAG-GR-KAN1 each in shade or ambient light, each with mock or Dexamethasone treatment) with two technical replicates were sequenced.

ORGANISM(S): Arabidopsis thaliana  

SUBMITTER: Ronny Brandt   Stephan Wenkel  Mark Stahl  Yakun Xie  Daniel Straub 

PROVIDER: E-GEOD-68684 | ArrayExpress | 2015-08-11

SECONDARY ACCESSION(S): GSE68684SRP058133PRJNA283396

REPOSITORIES: GEO, ArrayExpress, ENA

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Publications

Meta-Analysis of Arabidopsis KANADI1 Direct Target Genes Identifies a Basic Growth-Promoting Module Acting Upstream of Hormonal Signaling Pathways.

Xie Yakun Y   Straub Daniel D   Eguen Tenai T   Brandt Ronny R   Stahl Mark M   Martínez-García Jaime F JF   Wenkel Stephan S  

Plant physiology 20150805 2


An intricate network of antagonistically acting transcription factors mediates the formation of a flat leaf lamina of Arabidopsis (Arabidopsis thaliana) plants. In this context, members of the class III homeodomain leucine zipper (HD-ZIPIII) transcription factor family specify the adaxial domain (future upper side) of the leaf, while antagonistically acting KANADI transcription factors determine the abaxial domain (future lower side). Here, we used a messenger RNA sequencing approach to identify  ...[more]

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