Transcriptomics,Multiomics

Dataset Information

1K

Developmental gene expression of Xenopus laevis J strain


ABSTRACT: This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

OTHER RELATED OMICS DATASETS IN: PRJNA313213PRJNA306175PRJNA306102PRJNA306718

ORGANISM(S): Xenopus laevis  

TISSUE(S): Heart, Spleen, Testis, Brain, Stomach, Liver, Lung, Kidney, Eye, Ovary, Intestine, Muscle, Skin, Pancreas

SUBMITTER: Taejoon Kwon  

PROVIDER: E-GEOD-73431 | ArrayExpress | 2016-10-24

SECONDARY ACCESSION(S): GSE73431PRJNA296952

REPOSITORIES: GEO, ArrayExpress

Dataset's files

Source:
Action DRS
E-GEOD-73431.idf.txt Idf
E-GEOD-73431.sdrf.txt Txt
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Publications

Genome evolution in the allotetraploid frog Xenopus laevis.

Session Adam M AM   Uno Yoshinobu Y   Kwon Taejoon T   Chapman Jarrod A JA   Toyoda Atsushi A   Takahashi Shuji S   Fukui Akimasa A   Hikosaka Akira A   Suzuki Atsushi A   Kondo Mariko M   van Heeringen Simon J SJ   Quigley Ian I   Heinz Sven S   Ogino Hajime H   Ochi Haruki H   Hellsten Uffe U   Lyons Jessica B JB   Simakov Oleg O   Putnam Nicholas N   Stites Jonathan J   Kuroki Yoko Y   Tanaka Toshiaki T   Michiue Tatsuo T   Watanabe Minoru M   Bogdanovic Ozren O   Lister Ryan R   Georgiou Georgios G   Paranjpe Sarita S SS   van Kruijsbergen Ila I   Shu Shengquiang S   Carlson Joseph J   Kinoshita Tsutomu T   Ohta Yuko Y   Mawaribuchi Shuuji S   Jenkins Jerry J   Grimwood Jane J   Schmutz Jeremy J   Mitros Therese T   Mozaffari Sahar V SV   Suzuki Yutaka Y   Haramoto Yoshikazu Y   Yamamoto Takamasa S TS   Takagi Chiyo C   Heald Rebecca R   Miller Kelly K   Haudenschild Christian C   Kitzman Jacob J   Nakayama Takuya T   Izutsu Yumi Y   Robert Jacques J   Fortriede Joshua J   Burns Kevin K   Lotay Vaneet V   Karimi Kamran K   Yasuoka Yuuri Y   Dichmann Darwin S DS   Flajnik Martin F MF   Houston Douglas W DW   Shendure Jay J   DuPasquier Louis L   Vize Peter D PD   Zorn Aaron M AM   Ito Michihiko M   Marcotte Edward M EM   Wallingford John B JB   Ito Yuzuru Y   Asashima Makoto M   Ueno Naoto N   Matsuda Yoichi Y   Veenstra Gert Jan C GJ   Fujiyama Asao A   Harland Richard M RM   Taira Masanori M   Rokhsar Daniel S DS  

Nature 20161001 7625


To explore the origins and consequences of tetraploidy in the African clawed frog, we sequenced the Xenopus laevis genome and compared it to the related diploid X. tropicalis genome. We characterize the allotetraploid origin of X. laevis by partitioning its genome into two homoeologous subgenomes, marked by distinct families of 'fossil' transposable elements. On the basis of the activity of these elements and the age of hundreds of unitary pseudogenes, we estimate that the two diploid progenitor  ...[more]

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